Variant report

Variant	rs7760187
Chromosome Location	chr6:119684488-119684489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119674592..119678182-chr6:119682701..119685453,4	K562	blood:
2	chr6:119674592..119677137-chr6:119682701..119685226,2	K562	blood:
3	chr6:119682940..119684767-chr6:119691573..119693912,2	K562	blood:
4	chr6:119669855..119672148-chr6:119684470..119687227,2	MCF-7	breast:
5	chr6:119669513..119671716-chr6:119683293..119685592,2	K562	blood:
6	chr6:119680035..119681998-chr6:119682382..119684500,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ASF1A-2	chr6:119684420-119684497	XLOC_005448
2	lnc-ASF1A-2	chr6:119684420-119684585	NONHSAT114713

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3734385	0.93[AFR][1000 genomes]
rs72952964	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119671800-119689200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:119673400-119690000	Weak transcription	K562	blood
3	chr6:119673600-119687200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:119675200-119688800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:119677000-119686000	Weak transcription	Primary B cells from cord blood	blood
6	chr6:119677000-119691800	Weak transcription	Adipose Nuclei	Adipose
7	chr6:119679400-119691600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:119681000-119690200	Weak transcription	Primary T cells from cord blood	blood
9	chr6:119682000-119693200	Weak transcription	Left Ventricle	heart
10	chr6:119683400-119684600	Enhancers	Fetal Heart	heart
11	chr6:119684200-119686200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:119684400-119685400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:119684400-119686000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:119684400-119686200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links