Variant report

Variant	rs77604319
Chromosome Location	chr1:212687996-212687997
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:212683483..212692182-chr1:212779770..212786326,12	K562	blood:
2	chr1:212663791..212666125-chr1:212687800..212689535,2	K562	blood:
3	chr1:212686498..212689410-chr1:212730977..212733279,2	MCF-7	breast:
4	chr1:212675568..212680156-chr1:212685148..212688870,4	K562	blood:
5	chr1:212686747..212688926-chr1:212729063..212731425,2	K562	blood:
6	chr1:212685711..212688153-chr1:212791617..212793606,2	K562	blood:
7	chr1:212663187..212667039-chr1:212686323..212689300,3	K562	blood:
8	chr1:212683483..212690052-chr1:212778903..212785088,8	K562	blood:
9	chr1:212687310..212689846-chr1:212695967..212699890,3	K562	blood:
10	chr1:212687346..212690563-chr1:212787177..212790270,4	K562	blood:
11	chr1:212686720..212688652-chr1:212736381..212737960,2	K562	blood:
12	chr1:212687936..212690352-chr1:212730094..212732951,2	K562	blood:
13	chr1:212685969..212688191-chr1:212785458..212787889,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM206-4	chr1:212687866-212688157	XLOC_001194
2	lnc-TMEM206-4	chr1:212687891-212688141	NONHSAT009374

No data

Variant related genes	Relation type
ENSG00000162772	Chromatin interaction
ENSG00000260805	Chromatin interaction
ENSG00000264590	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
3	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
4	nsv873162	chr1:212610755-212716033	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv527863	chr1:212617423-212700618	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2757770	chr1:212648143-212843103	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
7	esv2758996	chr1:212648143-212843103	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
8	esv3347790	chr1:212687079-212689577	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212681000-212688600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:212685200-212689000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:212685400-212688000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:212686200-212688200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:212686200-212688400	Enhancers	NH-A	brain
6	chr1:212686400-212688000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:212686400-212688000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:212686400-212688000	Bivalent Enhancer	Placenta	Placenta
9	chr1:212686400-212688000	Enhancers	Left Ventricle	heart
10	chr1:212686400-212688400	Enhancers	Pancreas	Pancrea
11	chr1:212686600-212688000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:212687000-212688000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
13	chr1:212687000-212688000	Enhancers	Fetal Heart	heart
14	chr1:212687000-212688000	Bivalent Enhancer	Small Intestine	intestine
15	chr1:212687000-212688000	Bivalent Enhancer	HUVEC	blood vessel
16	chr1:212687000-212688400	Enhancers	Lung	lung
17	chr1:212687200-212688000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:212687200-212688000	Flanking Active TSS	Brain Angular Gyrus	brain
19	chr1:212687200-212688000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
20	chr1:212687200-212688200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:212687200-212688600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
22	chr1:212687200-212688600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
23	chr1:212687200-212688600	Bivalent Enhancer	Fetal Thymus	thymus
24	chr1:212687200-212688800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr1:212687400-212688000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr1:212687400-212688000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
27	chr1:212687400-212688000	Flanking Active TSS	Brain Cingulate Gyrus	brain
28	chr1:212687400-212688000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
29	chr1:212687400-212688000	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:212687400-212688000	Flanking Active TSS	Brain Substantia Nigra	brain
31	chr1:212687400-212688000	Bivalent Enhancer	Esophagus	oesophagus
32	chr1:212687400-212688000	Bivalent Enhancer	Ovary	ovary
33	chr1:212687400-212688000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
34	chr1:212687400-212688000	Enhancers	A549	lung
35	chr1:212687400-212688200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
36	chr1:212687400-212688200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
37	chr1:212687400-212688400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
38	chr1:212687400-212688400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
39	chr1:212687400-212688600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
40	chr1:212687400-212688600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr1:212687400-212688600	Bivalent Enhancer	Fetal Brain Male	brain
42	chr1:212687400-212688600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
43	chr1:212687400-212688800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
44	chr1:212687400-212688800	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr1:212687600-212688000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
46	chr1:212687600-212688000	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
47	chr1:212687600-212688000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr1:212687600-212688000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr1:212687600-212688000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
50	chr1:212687600-212688000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain

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