Variant report

Variant	rs7760665
Chromosome Location	chr6:65705075-65705076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11752311	0.83[ASN][1000 genomes]
rs11756218	0.90[ASN][1000 genomes]
rs11757845	0.90[ASN][1000 genomes]
rs11759933	0.84[ASN][1000 genomes]
rs12175848	0.81[ASN][1000 genomes]
rs17688615	0.87[ASN][1000 genomes]
rs2224207	0.83[ASN][1000 genomes]
rs2349998	0.92[ASN][1000 genomes]
rs2349999	0.87[ASN][1000 genomes]
rs28493571	0.89[ASN][1000 genomes]
rs28546411	0.90[ASN][1000 genomes]
rs28583858	0.86[ASN][1000 genomes]
rs28710139	0.80[ASN][1000 genomes]
rs34346075	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4710290	0.83[EUR][1000 genomes]
rs718017	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72875929	0.87[ASN][1000 genomes]
rs72875932	0.87[ASN][1000 genomes]
rs72875936	0.87[ASN][1000 genomes]
rs72875953	0.87[ASN][1000 genomes]
rs72875955	0.87[ASN][1000 genomes]
rs72875958	0.87[ASN][1000 genomes]
rs72875962	0.87[ASN][1000 genomes]
rs72875963	0.87[ASN][1000 genomes]
rs72875965	0.87[ASN][1000 genomes]
rs72875967	0.87[ASN][1000 genomes]
rs72875968	0.87[ASN][1000 genomes]
rs72875972	0.90[ASN][1000 genomes]
rs72875975	0.90[ASN][1000 genomes]
rs72875977	0.87[ASN][1000 genomes]
rs72875979	0.90[ASN][1000 genomes]
rs7738129	0.85[ASN][1000 genomes]
rs7765697	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9342454	0.87[ASN][1000 genomes]
rs9345573	0.81[ASN][1000 genomes]
rs9345574	0.84[ASN][1000 genomes]
rs9345575	0.87[ASN][1000 genomes]
rs9345576	0.87[ASN][1000 genomes]
rs9345578	0.87[ASN][1000 genomes]
rs9345582	0.89[ASN][1000 genomes]
rs9345583	0.89[ASN][1000 genomes]
rs9345584	0.89[ASN][1000 genomes]
rs9345585	0.87[ASN][1000 genomes]
rs9345591	0.85[ASN][1000 genomes]
rs9351475	0.87[ASN][1000 genomes]
rs9351477	0.87[ASN][1000 genomes]
rs9354194	0.81[ASN][1000 genomes]
rs9354195	0.81[ASN][1000 genomes]
rs9354196	0.87[ASN][1000 genomes]
rs9354197	0.87[ASN][1000 genomes]
rs9354199	0.89[ASN][1000 genomes]
rs9354203	0.84[ASN][1000 genomes]
rs9360103	0.87[ASN][1000 genomes]
rs9360105	0.89[ASN][1000 genomes]
rs9360106	0.89[ASN][1000 genomes]
rs9360109	0.84[ASN][1000 genomes]
rs9363301	0.83[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs9363302	0.87[ASN][1000 genomes]
rs9363303	0.87[ASN][1000 genomes]
rs9363304	0.87[ASN][1000 genomes]
rs9363305	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9363307	0.87[ASN][1000 genomes]
rs9363308	0.87[ASN][1000 genomes]
rs9363309	0.90[ASN][1000 genomes]
rs9363310	0.89[ASN][1000 genomes]
rs9363311	0.89[ASN][1000 genomes]
rs9363312	0.89[ASN][1000 genomes]
rs9363313	0.89[ASN][1000 genomes]
rs9363314	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020411	chr6:65321029-65854790	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538276	chr6:65321029-65854790	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1024611	chr6:65379523-65736399	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1034253	chr6:65390865-65865124	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538278	chr6:65390865-65865124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv949287	chr6:65422320-65828488	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv948458	chr6:65463110-65828488	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv933558	chr6:65524861-65760189	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv603406	chr6:65571770-65712288	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1034043	chr6:65573463-65823028	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1034230	chr6:65579061-65887750	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv933464	chr6:65596504-65767718	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv933937	chr6:65596504-65926900	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	nsv933776	chr6:65598694-65760189	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv1022556	chr6:65624150-65914258	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv934051	chr6:65625209-65926900	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv603407	chr6:65637508-65709059	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv886008	chr6:65650698-65722525	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv934217	chr6:65655722-65767718	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
20	nsv933140	chr6:65655722-65814323	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
21	nsv886009	chr6:65698500-65918809	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	nsv538282	chr6:65699165-65735252	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv1823254	chr6:65705075-65714719	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7760665	PTP4A1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65705000-65705200	Enhancers	Pancreas	Pancrea

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