Variant report

Variant	rs7760747
Chromosome Location	chr6:20165846-20165847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13197946	1.00[ASN][1000 genomes]
rs9460461	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9460462	1.00[ASN][1000 genomes]
rs9465643	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029729	chr6:20113226-20235122	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538155	chr6:20113226-20235122	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1033904	chr6:20127596-20210374	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:20139400-20173400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:20139600-20201200	Weak transcription	Fetal Lung	lung
3	chr6:20145000-20170200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:20145000-20170200	Weak transcription	Spleen	Spleen
5	chr6:20145200-20170000	Weak transcription	Esophagus	oesophagus
6	chr6:20146000-20170200	Weak transcription	Aorta	Aorta
7	chr6:20146200-20169200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:20147600-20170200	Weak transcription	Gastric	stomach
9	chr6:20151600-20173400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:20152000-20173800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:20152200-20166400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:20152200-20166400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:20152200-20166600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:20152200-20168000	Weak transcription	Adipose Nuclei	Adipose
15	chr6:20152200-20173200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:20152200-20173800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:20152200-20183200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:20152400-20169400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:20152400-20173000	Weak transcription	Dnd41	blood
20	chr6:20152400-20173800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:20153000-20181400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:20154400-20169200	Weak transcription	Liver	Liver
23	chr6:20154400-20173800	Weak transcription	Fetal Intestine Large	intestine
24	chr6:20155400-20168200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:20155600-20168000	Weak transcription	Right Ventricle	heart
26	chr6:20155600-20174200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:20155800-20169200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr6:20157400-20171400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:20157600-20174400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:20159200-20169200	Weak transcription	K562	blood
31	chr6:20160600-20169200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:20160800-20169400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:20161000-20168600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:20161400-20168600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:20161400-20179400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:20161600-20170200	Weak transcription	Lung	lung
37	chr6:20162000-20180600	Weak transcription	Pancreas	Pancrea
38	chr6:20162800-20193000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:20163000-20166600	Weak transcription	GM12878-XiMat	blood
40	chr6:20163200-20166000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:20163200-20169400	Weak transcription	NHEK	skin
42	chr6:20163800-20183200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:20164000-20166400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:20164000-20169400	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:20164200-20166400	Weak transcription	Fetal Intestine Small	intestine
46	chr6:20164200-20166600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr6:20164200-20166600	Weak transcription	Fetal Stomach	stomach
48	chr6:20164200-20169200	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:20164200-20169600	Weak transcription	Ovary	ovary
50	chr6:20164200-20170200	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links