Variant report

Variant	rs7760849
Chromosome Location	chr6:92379571-92379572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:92378048..92380672-chr6:92398849..92401424,2	K562	blood:

Variant related genes	Relation type
ENSG00000224944	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10485100	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884625	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884627	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885083	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885084	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56140109	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923562	1.00[CEU][hapmap]
rs9451749	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9451750	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9451752	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9451753	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9451754	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9451756	1.00[ASN][1000 genomes]
rs9451757	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9451758	1.00[ASN][1000 genomes]
rs9451759	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9451760	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1034981	chr6:92280070-92530848	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1018145	chr6:92328392-92951562	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv428491	chr6:92329694-92474678	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1028736	chr6:92362109-92423792	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92370000-92383400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:92378600-92379800	Enhancers	Fetal Brain Male	brain
3	chr6:92378600-92380200	Enhancers	HSMM	muscle
4	chr6:92379000-92379600	Flanking Active TSS	Brain Cingulate Gyrus	brain
5	chr6:92379000-92379600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr6:92379000-92379600	Active TSS	Fetal Brain Female	brain
7	chr6:92379000-92379800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
8	chr6:92379000-92379800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:92379000-92379800	Flanking Active TSS	HSMMtube	muscle
10	chr6:92379000-92380000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:92379000-92380000	Enhancers	Fetal Stomach	stomach
12	chr6:92379200-92379600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:92379200-92379600	Flanking Active TSS	Brain Angular Gyrus	brain
14	chr6:92379200-92379600	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr6:92379200-92379600	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr6:92379200-92379800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:92379200-92379800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:92379200-92380000	Enhancers	Fetal Heart	heart
19	chr6:92379400-92379800	Enhancers	Brain Substantia Nigra	brain
20	chr6:92379400-92379800	Enhancers	NH-A	brain
21	chr6:92379400-92380000	Enhancers	Brain Anterior Caudate	brain
22	chr6:92379400-92380000	Enhancers	Brain Germinal Matrix	brain
23	chr6:92379400-92380000	Enhancers	Fetal Muscle Leg	muscle
24	chr6:92379400-92386400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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