Variant report

Variant	rs7761519
Chromosome Location	chr6:167116262-167116263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs4709128	0.94[EUR][1000 genomes]
rs4709129	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs4710082	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4710083	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4710087	1.00[JPT][hapmap]
rs6456107	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6456108	0.85[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6917154	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs760837	0.85[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7768395	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs9295363	1.00[JPT][hapmap]
rs9295364	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9295365	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs9295367	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs9348176	0.86[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9356513	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1020888	chr6:167059455-167136562	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv538540	chr6:167059455-167136562	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2754464	chr6:167059528-167130749	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
10	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
11	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167102200-167116600	Weak transcription	Brain Anterior Caudate	brain
2	chr6:167102200-167117600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:167109200-167117000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:167112800-167116600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:167115000-167120800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:167115200-167120400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:167115400-167118400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:167115800-167118000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:167116000-167116400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:167116000-167117800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:167116000-167118000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:167116000-167118400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:167116000-167118400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:167116200-167116600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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