Variant report

Variant	rs7762247
Chromosome Location	chr6:142533534-142533535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11155238	0.93[AMR][1000 genomes]
rs13437195	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886732	chr6:142290338-142536049	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830824	chr6:142361107-142544929	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142484200-142533800	Weak transcription	Aorta	Aorta
2	chr6:142489000-142543200	Weak transcription	Small Intestine	intestine
3	chr6:142495600-142533600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:142496200-142533800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:142496200-142533800	Weak transcription	Gastric	stomach
6	chr6:142496200-142533800	Weak transcription	Pancreas	Pancrea
7	chr6:142496400-142533600	Weak transcription	Colonic Mucosa	Colon
8	chr6:142496600-142533800	Weak transcription	Left Ventricle	heart
9	chr6:142496600-142546800	Weak transcription	NHLF	lung
10	chr6:142507800-142533800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:142510400-142534000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:142510400-142534200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:142510800-142534600	Weak transcription	Hela-S3	cervix
14	chr6:142513400-142533600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:142515400-142541800	Weak transcription	Psoas Muscle	Psoas
16	chr6:142517200-142535400	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:142517400-142533800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:142517800-142533600	Weak transcription	Right Ventricle	heart
19	chr6:142518000-142533800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:142518000-142534400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:142518000-142534400	Weak transcription	Spleen	Spleen
22	chr6:142518800-142533800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:142519000-142534400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:142519200-142533600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:142519600-142533800	Strong transcription	Fetal Thymus	thymus
26	chr6:142519600-142535200	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:142519600-142541800	Strong transcription	HSMM	muscle
28	chr6:142520400-142533600	Weak transcription	Brain Anterior Caudate	brain
29	chr6:142521600-142542600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:142523000-142543000	Weak transcription	Stomach Mucosa	stomach
31	chr6:142523200-142534600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:142524400-142533600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:142525400-142533600	Weak transcription	Brain Angular Gyrus	brain
34	chr6:142526000-142535800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:142526400-142533800	Weak transcription	Esophagus	oesophagus
36	chr6:142527400-142534200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:142527400-142535800	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr6:142528000-142533600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:142528200-142534200	Weak transcription	NHEK	skin
40	chr6:142528400-142535200	ZNF genes & repeats	Fetal Lung	lung
41	chr6:142528600-142533600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:142528600-142534600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:142528800-142533600	Weak transcription	Brain Substantia Nigra	brain
44	chr6:142528800-142533600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:142528800-142533600	Weak transcription	Thymus	Thymus
46	chr6:142528800-142533800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:142528800-142533800	Weak transcription	Lung	lung
48	chr6:142529000-142533800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:142529000-142533800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:142529200-142533600	Weak transcription	Fetal Stomach	stomach

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