Variant report

Variant	rs7762666
Chromosome Location	chr6:92189178-92189179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10085176	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58264019	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59741796	0.99[AFR][1000 genomes]
rs73753760	0.89[AFR][1000 genomes]
rs73753761	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753763	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73753765	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753766	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73753795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746569	0.84[AFR][1000 genomes]
rs7753444	1.00[ASN][1000 genomes]
rs9451645	1.00[ASN][1000 genomes]
rs9451647	1.00[ASN][1000 genomes]
rs9451651	1.00[ASN][1000 genomes]
rs9451652	1.00[ASN][1000 genomes]
rs9451653	1.00[ASN][1000 genomes]
rs9451655	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1025913	chr6:92103872-92258396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538361	chr6:92103872-92258396	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1024381	chr6:92169962-92194575	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92186000-92189200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:92186200-92189400	Weak transcription	Small Intestine	intestine
3	chr6:92186200-92190400	Weak transcription	Stomach Mucosa	stomach
4	chr6:92186400-92189200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:92186400-92189800	Weak transcription	GM12878-XiMat	blood
6	chr6:92188800-92190400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:92188800-92192600	Enhancers	HUVEC	blood vessel
8	chr6:92189000-92189200	Enhancers	Aorta	Aorta
9	chr6:92189000-92189400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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