Variant report

Variant	rs7762882
Chromosome Location	chr6:78542309-78542310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11754716	0.93[ASN][1000 genomes]
rs11758866	0.93[ASN][1000 genomes]
rs1513013	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2101181	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28558486	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2874334	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28835021	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56096318	0.93[ASN][1000 genomes]
rs62418032	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62418035	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62418036	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62425069	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62427310	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62427311	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6917773	0.93[ASN][1000 genomes]
rs6917960	0.93[ASN][1000 genomes]
rs6942291	0.83[ASN][1000 genomes]
rs7744518	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9294089	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9341694	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9343663	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9343676	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9350732	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9350733	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9350735	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352528	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9359283	0.93[ASN][1000 genomes]
rs9359291	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9359304	1.00[CHB][hapmap]
rs9361274	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9361282	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9361287	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9361288	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs953576	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028259	chr6:78059491-78709871	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538325	chr6:78059491-78709871	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv603812	chr6:78336806-78646748	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2758063	chr6:78336955-78580830	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759446	chr6:78336955-78580830	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1016961	chr6:78352231-79003866	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv538326	chr6:78352231-79003866	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv949682	chr6:78355600-79002515	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv886226	chr6:78484787-78718367	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv428486	chr6:78519436-78693965	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3693356	chr6:78534702-78597728	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	esv3326004	chr6:78539833-78544331	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78540000-78544400	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links