Variant report

Variant	rs77630018
Chromosome Location	chr3:179832351-179832352
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012880	chr3:179772283-179835563	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv275096	chr3:179831081-179833141	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179810600-179843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:179828200-179835000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:179831800-179835400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:179832000-179832400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:179832000-179832600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr3:179832000-179834200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:179832000-179835200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:179832200-179832400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:179832200-179832400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:179832200-179832600	Enhancers	Brain Angular Gyrus	brain
11	chr3:179832200-179832600	Enhancers	Ovary	ovary
12	chr3:179832200-179832800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:179832200-179833000	Enhancers	Brain Anterior Caudate	brain
14	chr3:179832200-179834200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr3:179832200-179835400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr3:179832200-179836400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:179832200-179836400	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links