Variant report

Variant	rs7763461
Chromosome Location	chr6:44153635-44153636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44152056..44154771-chr6:44158466..44160359,2	K562	blood:
2	chr6:44152776..44155726-chr6:44156919..44159966,5	K562	blood:
3	chr6:44152401..44154524-chr6:44279508..44281257,2	K562	blood:
4	chr6:44152329..44155208-chr6:44155507..44158419,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM63B-2	chr6:44152946-44153667	NONHSAT112950

Variant related genes	Relation type
ENSG00000124608	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4714767	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44145000-44153800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:44145200-44153800	Weak transcription	Spleen	Spleen
3	chr6:44147400-44153800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:44151600-44153800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:44151800-44154600	Enhancers	Stomach Mucosa	stomach
6	chr6:44152000-44153800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:44152200-44153800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:44152200-44153800	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:44152400-44153800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:44152600-44153800	Weak transcription	Colonic Mucosa	Colon
11	chr6:44152800-44154000	Enhancers	Duodenum Mucosa	Duodenum
12	chr6:44152800-44154200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:44153000-44154400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:44153000-44160200	Weak transcription	Fetal Intestine Small	intestine
15	chr6:44153200-44154000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:44153200-44154400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:44153200-44154400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:44153200-44154400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:44153200-44154400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr6:44153200-44154400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:44153200-44154600	Enhancers	Fetal Thymus	thymus
22	chr6:44153200-44155200	Enhancers	HUVEC	blood vessel
23	chr6:44153600-44153800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr6:44153600-44153800	Enhancers	HepG2	liver
25	chr6:44153600-44154000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:44153600-44154000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr6:44153600-44154000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr6:44153600-44154000	Enhancers	Right Ventricle	heart
29	chr6:44153600-44154000	Enhancers	Thymus	Thymus
30	chr6:44153600-44154200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr6:44153600-44154200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:44153600-44154200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:44153600-44154200	Enhancers	Primary T cells from cord blood	blood
34	chr6:44153600-44154200	Enhancers	Primary hematopoietic stem cells	blood
35	chr6:44153600-44154200	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr6:44153600-44154200	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr6:44153600-44154200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:44153600-44154200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:44153600-44154400	Enhancers	H1 Cell Line	embryonic stem cell
40	chr6:44153600-44154400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:44153600-44154400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr6:44153600-44154400	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr6:44153600-44154400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:44153600-44154400	Enhancers	Adipose Nuclei	Adipose
45	chr6:44153600-44154600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:44153600-44154600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:44153600-44154600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:44153600-44154600	Enhancers	K562	blood

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