Variant report

Variant	rs7763838
Chromosome Location	chr6:70463465-70463466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70461923..70464726-chr6:70466423..70468555,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs6455341	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901941	1.00[YRI][hapmap]
rs6917429	1.00[YRI][hapmap]
rs6917742	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919250	1.00[AMR][1000 genomes]
rs6928782	1.00[YRI][hapmap]
rs6934751	1.00[AMR][1000 genomes]
rs73477457	1.00[AMR][1000 genomes]
rs73481729	1.00[AMR][1000 genomes]
rs73481746	1.00[AMR][1000 genomes]
rs73481760	1.00[AMR][1000 genomes]
rs73481771	1.00[AMR][1000 genomes]
rs73485505	1.00[AMR][1000 genomes]
rs73485528	1.00[AMR][1000 genomes]
rs73485534	1.00[AMR][1000 genomes]
rs73486006	1.00[AMR][1000 genomes]
rs73486025	1.00[AMR][1000 genomes]
rs73486045	1.00[AMR][1000 genomes]
rs73486048	1.00[AMR][1000 genomes]
rs7762910	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70380800-70467800	Weak transcription	K562	blood
2	chr6:70405000-70468400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:70429000-70467600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:70431400-70498600	Weak transcription	Ovary	ovary
5	chr6:70432000-70468200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:70432000-70470400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:70432000-70470400	Weak transcription	Gastric	stomach
8	chr6:70432000-70479800	Weak transcription	Pancreas	Pancrea
9	chr6:70432200-70480000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:70435800-70498800	Weak transcription	Adipose Nuclei	Adipose
11	chr6:70442400-70498200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:70442400-70498400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:70443000-70468000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:70446000-70470400	Weak transcription	Psoas Muscle	Psoas
15	chr6:70447800-70498400	Weak transcription	Placenta	Placenta
16	chr6:70448400-70470600	Weak transcription	Right Ventricle	heart
17	chr6:70448800-70489800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:70450600-70472000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:70450800-70487600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:70453800-70468600	Weak transcription	Small Intestine	intestine
21	chr6:70453800-70505600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:70455800-70464600	Strong transcription	Primary B cells from cord blood	blood
23	chr6:70456400-70483000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:70456600-70464400	Weak transcription	Fetal Kidney	kidney
25	chr6:70456600-70471600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr6:70456600-70491000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:70456800-70463600	Weak transcription	Fetal Intestine Large	intestine
28	chr6:70456800-70468000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr6:70456800-70470600	Weak transcription	Left Ventricle	heart
30	chr6:70456800-70473400	Weak transcription	Aorta	Aorta
31	chr6:70457000-70466000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:70457000-70466600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:70457200-70465800	Weak transcription	Fetal Stomach	stomach
34	chr6:70457200-70468200	Weak transcription	Liver	Liver
35	chr6:70457200-70486800	Weak transcription	Thymus	Thymus
36	chr6:70457200-70489800	Weak transcription	Esophagus	oesophagus
37	chr6:70457200-70494800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:70457400-70463800	Weak transcription	Primary T cells from cord blood	blood
39	chr6:70457400-70485000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:70457400-70489800	Weak transcription	Dnd41	blood
41	chr6:70457600-70463800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:70457600-70466000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:70457600-70473800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr6:70457600-70484600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:70457600-70487400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr6:70457800-70465800	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr6:70458200-70472400	Weak transcription	Fetal Thymus	thymus
48	chr6:70459000-70470000	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:70459400-70474000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:70459600-70477200	Weak transcription	Brain Cingulate Gyrus	brain

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