Variant report

Variant	rs7764676
Chromosome Location	chr6:4821087-4821088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4815291..4819346-chr6:4820857..4822798,4	K562	blood:
2	chr6:4818061..4820249-chr6:4821057..4823900,2	MCF-7	breast:
3	chr6:4820521..4822637-chr6:4825444..4827766,3	MCF-7	breast:
4	chr6:4813316..4814921-chr6:4820948..4822599,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1022497	0.92[AFR][1000 genomes]
rs1022498	0.92[AFR][1000 genomes]
rs11967447	1.00[AFR][1000 genomes]
rs11967765	0.94[AFR][1000 genomes]
rs11967801	0.94[AFR][1000 genomes]
rs11967926	1.00[AFR][1000 genomes]
rs11968053	1.00[AFR][1000 genomes]
rs1265329	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1265331	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs233475	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2875969	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4367417	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs56740053	0.92[AFR][1000 genomes]
rs57143473	0.92[AFR][1000 genomes]
rs57484544	0.92[AFR][1000 genomes]
rs57890105	1.00[AFR][1000 genomes]
rs59852455	0.92[AFR][1000 genomes]
rs60632423	1.00[AFR][1000 genomes]
rs6911106	1.00[AFR][1000 genomes]
rs6922314	0.92[AFR][1000 genomes]
rs6934189	0.92[AFR][1000 genomes]
rs6936040	0.94[AFR][1000 genomes]
rs6939986	1.00[AFR][1000 genomes]
rs7744408	0.92[AFR][1000 genomes]
rs7744582	0.83[AFR][1000 genomes]
rs7747385	0.92[AFR][1000 genomes]
rs7748721	0.92[AFR][1000 genomes]
rs7764795	1.00[AFR][1000 genomes]
rs7765321	1.00[AFR][1000 genomes]
rs808619	1.00[YRI][hapmap]
rs808623	1.00[YRI][hapmap]
rs808624	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1015888	chr6:4787784-4883663	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv966675	chr6:4819733-4855009	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4806800-4829400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:4807000-4821200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:4807200-4827800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:4812400-4829600	Weak transcription	Left Ventricle	heart
5	chr6:4812600-4826800	Weak transcription	HepG2	liver
6	chr6:4812800-4822800	Weak transcription	Adipose Nuclei	Adipose
7	chr6:4812800-4823000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:4812800-4828800	Weak transcription	Hela-S3	cervix
9	chr6:4814200-4829600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:4815000-4826000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:4815000-4827400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:4815200-4823000	Weak transcription	Ovary	ovary
13	chr6:4815200-4824200	Weak transcription	Primary B cells from cord blood	blood
14	chr6:4815200-4829600	Weak transcription	Lung	lung
15	chr6:4817800-4827000	Weak transcription	K562	blood
16	chr6:4818200-4821200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr6:4819000-4821400	Enhancers	GM12878-XiMat	blood
18	chr6:4819200-4822200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:4819200-4822800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:4819400-4821200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:4819600-4821200	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:4819800-4821200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr6:4820000-4821200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:4820000-4821200	Enhancers	Psoas Muscle	Psoas
25	chr6:4820000-4821200	Enhancers	Spleen	Spleen
26	chr6:4820000-4821400	Enhancers	NHDF-Ad	bronchial
27	chr6:4820000-4821400	Enhancers	NHEK	skin
28	chr6:4820200-4821200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:4820200-4821200	Enhancers	Osteobl	bone
30	chr6:4820200-4821400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
31	chr6:4820200-4828000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:4820400-4821200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:4820400-4822400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:4820400-4824000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:4820400-4825400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:4820400-4844200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:4820800-4821200	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr6:4820800-4821200	Enhancers	Rectal Smooth Muscle	rectum
39	chr6:4820800-4821400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:4820800-4822200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:4820800-4822400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:4820800-4823000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr6:4820800-4825400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:4821000-4821200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:4821000-4821200	Enhancers	Colonic Mucosa	Colon
46	chr6:4821000-4821200	ZNF genes & repeats	Fetal Intestine Small	intestine

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