Variant report

Variant	rs7765388
Chromosome Location	chr6:37632322-37632323
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr6:37632162-37632362	GM12878	blood:	n/a	chr6:37632293-37632304

Variant related genes	Relation type
MDGA1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10947689	0.83[EUR][1000 genomes]
rs3846878	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6903131	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37622400-37632400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:37622400-37633000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:37626000-37633400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:37626000-37635000	Weak transcription	A549	lung
5	chr6:37629200-37635000	Weak transcription	Aorta	Aorta
6	chr6:37629400-37646000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:37629600-37641000	Weak transcription	Fetal Brain Female	brain
8	chr6:37629600-37659600	Weak transcription	Ovary	ovary
9	chr6:37630400-37632800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:37630400-37634600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:37630600-37633600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:37630600-37633800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:37630800-37632600	Enhancers	HSMMtube	muscle
14	chr6:37630800-37633600	Enhancers	Brain Angular Gyrus	brain
15	chr6:37630800-37633600	Enhancers	Brain Hippocampus Middle	brain
16	chr6:37630800-37633800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:37631000-37633600	Enhancers	Brain Cingulate Gyrus	brain
18	chr6:37631000-37633600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:37631200-37633400	Enhancers	Brain Anterior Caudate	brain
20	chr6:37631400-37632600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:37631600-37633000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr6:37631600-37633600	Enhancers	Gastric	stomach
23	chr6:37631600-37635000	Weak transcription	Osteobl	bone
24	chr6:37631800-37632600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:37631800-37632800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:37631800-37633600	Enhancers	Fetal Muscle Leg	muscle
27	chr6:37631800-37634600	Weak transcription	NHLF	lung
28	chr6:37631800-37634800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:37631800-37635000	Weak transcription	NH-A	brain
30	chr6:37631800-37635000	Weak transcription	NHDF-Ad	bronchial
31	chr6:37631800-37647600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:37632000-37633200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr6:37632000-37633600	Enhancers	Brain Substantia Nigra	brain
34	chr6:37632000-37634800	Weak transcription	Fetal Brain Male	brain
35	chr6:37632200-37632600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:37632200-37633600	Enhancers	Right Atrium	heart
37	chr6:37632200-37633800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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