Variant report

Variant	rs7765526
Chromosome Location	chr6:147713764-147713765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147710173..147716177-chr6:147716262..147720570,6	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1039084	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1039086	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1147846	0.80[EUR][1000 genomes]
rs1147847	0.81[EUR][1000 genomes]
rs12191720	0.83[ASN][1000 genomes]
rs12199542	0.83[ASN][1000 genomes]
rs12527235	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1992389	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2328813	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2582929	0.81[EUR][1000 genomes]
rs2786183	0.81[EUR][1000 genomes]
rs2786185	0.81[EUR][1000 genomes]
rs4896904	0.82[JPT][hapmap]
rs4896907	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs566028	0.81[JPT][hapmap]
rs584456	0.81[EUR][1000 genomes]
rs58987334	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs597631	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs614476	0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs62435630	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs659399	0.80[EUR][1000 genomes]
rs6928919	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6932613	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7739314	0.89[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7762087	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7769576	0.82[ASN][1000 genomes]
rs9373522	0.82[ASN][1000 genomes]
rs9373523	0.80[EUR][1000 genomes]
rs9377048	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9390459	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390460	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390461	0.95[EUR][1000 genomes]
rs9390462	0.82[EUR][1000 genomes]
rs9390463	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399597	0.82[ASN][1000 genomes]
rs9399598	0.81[JPT][hapmap]
rs9399599	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv1832155	chr6:147554900-147715464	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv886755	chr6:147577646-147729477	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv886756	chr6:147580697-147729477	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv830839	chr6:147584914-147757264	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv886757	chr6:147591022-147729477	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv886759	chr6:147686274-147764267	Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147645200-147715000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:147680400-147721800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:147685600-147714200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:147687800-147724600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:147704200-147717600	Weak transcription	Fetal Stomach	stomach
6	chr6:147706400-147715600	Weak transcription	Aorta	Aorta
7	chr6:147706400-147715600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:147706400-147715800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:147706400-147715800	Weak transcription	HMEC	breast
10	chr6:147706400-147716800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:147706600-147716000	Weak transcription	HSMM	muscle
12	chr6:147706800-147716800	Weak transcription	Fetal Kidney	kidney
13	chr6:147707200-147713800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:147707200-147715600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:147707400-147715800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:147707400-147716200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:147707400-147718400	Weak transcription	K562	blood
18	chr6:147709200-147716800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:147709400-147715600	Weak transcription	NHDF-Ad	bronchial
20	chr6:147709600-147715800	Weak transcription	Osteobl	bone
21	chr6:147709800-147718600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr6:147711200-147716000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:147712400-147715400	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:147713200-147714200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:147713400-147714400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links