Variant report

Variant	rs7765560
Chromosome Location	chr6:106474303-106474304
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1769969	1.00[AMR][1000 genomes]
rs6916860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761687	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025231	chr6:106451012-106634389	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830755	chr6:106461705-106624202	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106463400-106474800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:106464200-106474600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:106464200-106474800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:106468600-106474600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:106469400-106483200	Weak transcription	Fetal Intestine Large	intestine
6	chr6:106470600-106477400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:106471200-106474800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:106472800-106474800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:106473200-106474400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:106473400-106474800	Enhancers	NHLF	lung
11	chr6:106473400-106475800	Enhancers	NHDF-Ad	bronchial
12	chr6:106473800-106474600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:106474000-106475800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:106474200-106474400	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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