Variant report

Variant	rs7766008
Chromosome Location	chr6:114380130-114380131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114316102..114317012-chr6:114379944..114380603,2	MCF-7	breast:
2	chr6:114370743..114373108-chr6:114379270..114381422,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MARCKS-5	chr6:114379795-114380952	ENSG00000228624

Variant related genes	Relation type
ENSG00000228624	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7752154	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs875776	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114363800-114385000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:114370000-114387000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:114370200-114382000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:114370200-114389600	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:114371400-114388200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:114372600-114380400	Strong transcription	HSMM	muscle
7	chr6:114376000-114381000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:114376600-114382000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:114376800-114380800	Weak transcription	Fetal Stomach	stomach
10	chr6:114377200-114381600	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:114377200-114381600	Weak transcription	Brain Substantia Nigra	brain
12	chr6:114377200-114381800	Weak transcription	Brain Angular Gyrus	brain
13	chr6:114377800-114380200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:114379000-114380200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:114379200-114380200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr6:114379400-114381800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:114379400-114384800	Weak transcription	HSMMtube	muscle
18	chr6:114379600-114390400	Weak transcription	HepG2	liver
19	chr6:114380000-114380200	Enhancers	Brain Anterior Caudate	brain
20	chr6:114380000-114380200	Enhancers	Placenta	Placenta
21	chr6:114380000-114380200	Enhancers	Psoas Muscle	Psoas
22	chr6:114380000-114380400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:114380000-114380400	Enhancers	Brain Cingulate Gyrus	brain

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