Variant report

Variant	rs7766870
Chromosome Location	chr6:161396138-161396139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57012092	0.94[EUR][1000 genomes]
rs58673651	0.96[EUR][1000 genomes]
rs73023842	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73023845	0.89[EUR][1000 genomes]
rs73023847	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73023852	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73023862	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7761753	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7775264	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161392200-161396400	Enhancers	HSMM	muscle
2	chr6:161392400-161396400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:161392600-161396200	Enhancers	NHEK	skin
4	chr6:161392600-161396400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:161392800-161396400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:161392800-161396400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:161392800-161396600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:161392800-161396600	Enhancers	HMEC	breast
9	chr6:161393000-161396400	Enhancers	Fetal Muscle Leg	muscle
10	chr6:161393000-161396400	Enhancers	NHLF	lung
11	chr6:161393200-161397000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:161393400-161396200	Enhancers	Placenta	Placenta
13	chr6:161393800-161396200	Enhancers	K562	blood
14	chr6:161393800-161396400	Enhancers	Fetal Heart	heart
15	chr6:161393800-161396400	Enhancers	Left Ventricle	heart
16	chr6:161393800-161396400	Enhancers	Ovary	ovary
17	chr6:161394000-161396200	Enhancers	Right Ventricle	heart
18	chr6:161394000-161396400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:161394000-161396400	Enhancers	Adipose Nuclei	Adipose
20	chr6:161394000-161396400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr6:161394000-161396600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr6:161394000-161396600	Enhancers	Fetal Lung	lung
23	chr6:161394200-161396800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:161394200-161396800	Enhancers	Fetal Stomach	stomach
25	chr6:161394400-161396400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:161394600-161396400	Enhancers	Brain Germinal Matrix	brain
27	chr6:161394600-161396600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:161394600-161396800	Enhancers	Rectal Smooth Muscle	rectum
29	chr6:161395000-161396200	Enhancers	HSMMtube	muscle
30	chr6:161395000-161396400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr6:161395400-161396200	Enhancers	Duodenum Mucosa	Duodenum
32	chr6:161395400-161396400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:161395400-161396400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:161395400-161396600	Enhancers	Fetal Brain Male	brain
35	chr6:161395400-161396800	Enhancers	NHDF-Ad	bronchial
36	chr6:161395600-161396200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:161395600-161396400	Flanking Active TSS	Colon Smooth Muscle	Colon
38	chr6:161395600-161396400	Enhancers	Osteobl	bone
39	chr6:161395600-161396800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr6:161395600-161397000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:161395600-161397200	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr6:161395800-161396200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:161395800-161399000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:161395800-161399000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:161396000-161396200	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr6:161396000-161396200	Bivalent Enhancer	HepG2	liver
47	chr6:161396000-161396400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:161396000-161399200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:161396000-161399200	Weak transcription	NH-A	brain

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