Variant report

Variant	rs7768173
Chromosome Location	chr6:73848258-73848259
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1935537	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1935538	0.85[ASW][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap];1.00[ASN][1000 genomes]
rs55704237	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60764744	1.00[ASN][1000 genomes]
rs6917652	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6919630	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73454732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73454734	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7751839	0.86[AFR][1000 genomes]
rs7764373	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv519218	chr6:73845299-73862856	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73821000-73849800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:73839200-73854400	Weak transcription	Aorta	Aorta
3	chr6:73839800-73852400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:73842000-73855600	Weak transcription	HSMM	muscle
5	chr6:73844400-73867000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:73844600-73849800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:73844600-73865200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:73844800-73866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:73846000-73866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:73846400-73879200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:73847800-73848600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:73847800-73850600	Strong transcription	Primary B cells from cord blood	blood
13	chr6:73848000-73848400	Enhancers	NHEK	skin
14	chr6:73848000-73848600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:73848200-73848400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:73848200-73848600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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