Variant report

Variant	rs7768621
Chromosome Location	chr6:15468876-15468877
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15467280..15470049-chr6:15474791..15476337,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10949302	0.89[EUR][1000 genomes]
rs11753594	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11756950	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11759250	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11759978	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56070118	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72836316	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72836347	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15435800-15487600	Weak transcription	Colonic Mucosa	Colon
2	chr6:15444600-15477400	Weak transcription	Hela-S3	cervix
3	chr6:15445400-15474000	Weak transcription	NH-A	brain
4	chr6:15446600-15479800	Weak transcription	Gastric	stomach
5	chr6:15448200-15479800	Weak transcription	Pancreas	Pancrea
6	chr6:15452400-15475800	Weak transcription	Aorta	Aorta
7	chr6:15453000-15481000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:15455400-15469600	Weak transcription	Fetal Intestine Small	intestine
9	chr6:15455400-15475600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:15455400-15475600	Weak transcription	Esophagus	oesophagus
11	chr6:15457000-15480800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:15458400-15484200	Weak transcription	Small Intestine	intestine
13	chr6:15458800-15474600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:15460600-15469000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:15460800-15480000	Weak transcription	Stomach Mucosa	stomach
16	chr6:15461200-15472400	Weak transcription	Right Ventricle	heart
17	chr6:15461600-15491000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:15463000-15469200	Weak transcription	Left Ventricle	heart
19	chr6:15463000-15479800	Weak transcription	Fetal Brain Male	brain
20	chr6:15463200-15476600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:15463400-15469200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:15463600-15469000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:15463600-15473000	Weak transcription	Osteobl	bone
24	chr6:15463600-15473400	Weak transcription	NHEK	skin
25	chr6:15463600-15473600	Weak transcription	NHDF-Ad	bronchial
26	chr6:15463800-15473600	Weak transcription	Right Atrium	heart
27	chr6:15463800-15476400	Weak transcription	Ovary	ovary
28	chr6:15463800-15479800	Weak transcription	Brain Germinal Matrix	brain
29	chr6:15464400-15474000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:15464400-15474000	Strong transcription	Fetal Thymus	thymus
31	chr6:15464400-15474000	Weak transcription	HSMMtube	muscle
32	chr6:15464600-15469000	Weak transcription	Liver	Liver
33	chr6:15464800-15469000	Weak transcription	Fetal Lung	lung
34	chr6:15464800-15469000	Weak transcription	Placenta	Placenta
35	chr6:15464800-15474000	Weak transcription	Fetal Heart	heart
36	chr6:15464800-15479800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:15465000-15472400	Weak transcription	Psoas Muscle	Psoas
38	chr6:15465600-15480000	Weak transcription	Fetal Brain Female	brain
39	chr6:15466600-15470600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr6:15466600-15472400	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr6:15466600-15475000	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr6:15467600-15473400	Weak transcription	Brain Substantia Nigra	brain
43	chr6:15468000-15469400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:15468000-15471800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:15468000-15472000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr6:15468200-15469000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:15468200-15471800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr6:15468400-15469400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:15468400-15476000	Strong transcription	Primary B cells from cord blood	blood
50	chr6:15468400-15478200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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