Variant report

Variant	rs7768978
Chromosome Location	chr6:34404636-34404637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1811968	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2006833	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3913009	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3913010	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4713789	0.83[ASN][1000 genomes]
rs6924482	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7757586	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7757900	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7773447	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9366856	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9368813	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9380433	0.81[AMR][1000 genomes]
rs9380435	0.86[AMR][1000 genomes]
rs9394214	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9394215	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9394218	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9469778	0.82[AMR][1000 genomes]
rs9469779	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9469780	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7768978	NUDT3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34394200-34409200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:34394400-34433200	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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