Variant report

Variant	rs7769324
Chromosome Location	chr6:44300906-44300907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1566528	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs1566529	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs4714779	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7763988	0.87[YRI][hapmap]
rs7769315	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9472252	1.00[CEU][hapmap]
rs9472254	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44296200-44303600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:44297400-44303400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:44300200-44301200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:44300400-44301200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:44300400-44302600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:44300600-44301000	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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