Variant report

Variant	rs776940
Chromosome Location	chr8:107719857-107719858
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1484414	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1681885	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72680948	1.00[AFR][1000 genomes]
rs776945	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs776955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
2	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
3	chr8:107690200-107730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:107692000-107738400	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:107692800-107725800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:107694600-107738000	Weak transcription	Fetal Heart	heart
7	chr8:107695000-107725800	Weak transcription	NHLF	lung
8	chr8:107696000-107737200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:107697800-107723800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr8:107698000-107723000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:107698200-107731000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:107706000-107723600	Weak transcription	Brain Anterior Caudate	brain
13	chr8:107707800-107723600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr8:107707800-107737800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:107708800-107725600	Weak transcription	Fetal Brain Male	brain
16	chr8:107710000-107723800	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:107710200-107722800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:107710400-107720200	Weak transcription	Aorta	Aorta
19	chr8:107710400-107724600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:107710400-107725400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:107710400-107735600	Weak transcription	Fetal Intestine Small	intestine
22	chr8:107710400-107738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:107711800-107738200	Weak transcription	Brain Angular Gyrus	brain
25	chr8:107716200-107720800	Strong transcription	Liver	Liver
26	chr8:107716800-107721200	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr8:107717200-107737200	Weak transcription	Brain Hippocampus Middle	brain
28	chr8:107717800-107726000	Weak transcription	Brain Substantia Nigra	brain
29	chr8:107718000-107720800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr8:107718000-107720800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr8:107718000-107721400	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr8:107718000-107728600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr8:107718200-107721000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr8:107718200-107721200	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr8:107718600-107720000	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr8:107718600-107720000	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr8:107718600-107720000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr8:107718600-107720000	Strong transcription	HepG2	liver
39	chr8:107718600-107720000	Strong transcription	HMEC	breast
40	chr8:107718600-107720600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr8:107718600-107720600	Strong transcription	Rectal Smooth Muscle	rectum
42	chr8:107718600-107720600	Strong transcription	GM12878-XiMat	blood
43	chr8:107718600-107720800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:107718600-107720800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr8:107718600-107720800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr8:107718600-107720800	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr8:107718600-107721000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr8:107718600-107721000	Strong transcription	Duodenum Mucosa	Duodenum
49	chr8:107718600-107721000	Strong transcription	Fetal Lung	lung
50	chr8:107718600-107721200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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