Variant report

Variant	rs77696151
Chromosome Location	chr9:100744626-100744627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr9:100744433-100745863	K562	blood:	n/a	chr9:100745636-100745644
2	POLR2A	chr9:100742757-100747832	K562	blood:	n/a	n/a
3	JUND	chr9:100744580-100744916	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr9:100742705-100747942	PBDE	blood:	n/a	n/a
5	TEAD4	chr9:100744525-100744978	H1-hESC	embryonic stem cell:	n/a	n/a
6	MXI1	chr9:100742672-100749207	SK-N-SH	brain:	n/a	chr9:100742948-100742963 chr9:100747897-100747906
7	TCF12	chr9:100744581-100744869	H1-hESC	embryonic stem cell:	n/a	n/a
8	MTA3	chr9:100744605-100746379	GM12878	blood:	n/a	n/a
9	POLR2A	chr9:100744604-100744695	HepG2	liver:	n/a	n/a
10	POLR2A	chr9:100744502-100748027	GM18505	blood:	n/a	n/a
11	POLR2A	chr9:100743342-100749363	K562	blood:	n/a	n/a
12	POLR2A	chr9:100744571-100745180	H1-hESC	embryonic stem cell:	n/a	n/a
13	TCF12	chr9:100744555-100744989	H1-hESC	embryonic stem cell:	n/a	chr9:100744964-100744974
14	MYC	chr9:100744584-100748143	K562	blood:	n/a	chr9:100747186-100747195 chr9:100747738-100747749 chr9:100745050-100745060 chr9:100747739-100747748 chr9:100747738-100747749 chr9:100747739-100747749 chr9:100745365-100745374 chr9:100747739-100747748 chr9:100747739-100747749 chr9:100747187-100747194 chr9:100747185-100747196 chr9:100745284-100745293 chr9:100746432-100746442 chr9:100745379-100745386 chr9:100747185-100747196 chr9:100747738-100747748 chr9:100747740-100747747 chr9:100745376-100745385
15	POLR2A	chr9:100744535-100748054	Hela-S3	cervix:	n/a	n/a
16	POLR2A	chr9:100743431-100747853	Raji	blood:	n/a	n/a
17	POLR2A	chr9:100744526-100747007	SK-N-MC	brain:	n/a	n/a
18	TBL1XR1	chr9:100743779-100745748	K562	blood:	n/a	n/a
19	HEY1	chr9:100744513-100748046	K562	blood:	n/a	chr9:100747053-100747068 chr9:100745977-100745992 chr9:100745607-100745622 chr9:100746027-100746042 chr9:100745786-100745801 chr9:100747384-100747399 chr9:100747240-100747255 chr9:100746257-100746272
20	TBP	chr9:100742551-100747799	K562	blood:	n/a	n/a
21	ZNF263	chr9:100744612-100745736	HEK293-T-REx	kidney:	n/a	chr9:100745397-100745406
22	POU5F1	chr9:100744591-100745007	H1-hESC	embryonic stem cell:	n/a	chr9:100744849-100744863
23	POLR2A	chr9:100744526-100747903	K562	blood:	n/a	n/a
24	POLR2A	chr9:100744539-100747907	K562	blood:	n/a	n/a
25	UBTF	chr9:100744118-100747888	K562	blood:	n/a	n/a
26	POLR2A	chr9:100744534-100748321	GM12878	blood:	n/a	n/a
27	ZNF384	chr9:100744565-100745793	K562	blood:	n/a	n/a
28	POLR2A	chr9:100744565-100748198	GM12878	blood:	n/a	n/a
29	ATF2	chr9:100744483-100744971	H1-hESC	embryonic stem cell:	n/a	n/a
30	MAZ	chr9:100742476-100747973	K562	blood:	n/a	chr9:100747186-100747195 chr9:100747738-100747749 chr9:100745050-100745060 chr9:100747739-100747748 chr9:100747738-100747749 chr9:100745365-100745374 chr9:100747739-100747748 chr9:100742954-100742964 chr9:100747739-100747749 chr9:100747187-100747194 chr9:100747185-100747196 chr9:100745284-100745293 chr9:100746432-100746442 chr9:100745379-100745386 chr9:100747185-100747196 chr9:100747738-100747748 chr9:100747740-100747747 chr9:100745376-100745385
31	POLR2A	chr9:100744592-100747301	IMR90	lung:	n/a	n/a
32	POLR2A	chr9:100743637-100747962	K562	blood:	n/a	n/a
33	POLR2A	chr9:100743909-100748073	K562	blood:	n/a	n/a
34	TEAD4	chr9:100744441-100744846	K562	blood:	n/a	n/a
35	MAZ	chr9:100744470-100748081	IMR90	lung:	n/a	chr9:100747186-100747195 chr9:100747738-100747749 chr9:100745050-100745060 chr9:100747739-100747748 chr9:100747738-100747749 chr9:100745365-100745374 chr9:100747739-100747748 chr9:100747739-100747749 chr9:100747187-100747194 chr9:100747185-100747196 chr9:100745284-100745293 chr9:100746432-100746442 chr9:100745379-100745386 chr9:100747185-100747196 chr9:100747738-100747748 chr9:100747740-100747747 chr9:100745376-100745385
36	HDAC2	chr9:100744599-100744975	H1-hESC	embryonic stem cell:	n/a	chr9:100744616-100744625
37	ZBTB7A	chr9:100744616-100744808	K562	blood:	n/a	n/a
38	SP1	chr9:100744476-100745095	H1-hESC	embryonic stem cell:	n/a	n/a
39	JUND	chr9:100744534-100746226	K562	blood:	n/a	chr9:100745695-100745704 chr9:100746200-100746209 chr9:100746025-100746034
40	POLR2A	chr9:100744138-100747904	K562	blood:	n/a	n/a
41	JUN	chr9:100741876-100746321	K562	blood:	n/a	chr9:100745695-100745704 chr9:100746200-100746209 chr9:100746025-100746034
42	JUND	chr9:100744616-100744956	H1-hESC	embryonic stem cell:	n/a	n/a
43	ZNF274	chr9:100744546-100744862	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr9:100744500-100748202	GM12891	blood:	n/a	n/a
45	POLR2A	chr9:100742992-100747325	K562	blood:	n/a	n/a
46	NR2F2	chr9:100744571-100745980	K562	blood:	n/a	n/a
47	BACH1	chr9:100744598-100746242	H1-hESC	embryonic stem cell:	n/a	n/a
48	EP300	chr9:100744507-100745244	H1-hESC	embryonic stem cell:	n/a	n/a
49	POLR2A	chr9:100744504-100747891	K562	blood:	n/a	n/a
50	CTCF	chr9:100744443-100747485	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:100675954..100709047-chr9:100737887..100755543,175	K562	blood:
2	chr9:100744471..100747062-chr9:100817673..100820807,4	MCF-7	breast:
3	chr9:100743079..100747890-chr9:100817276..100822371,7	K562	blood:
4	chr9:100682029..100688801-chr9:100740969..100749393,29	MCF-7	breast:
5	chr9:100742340..100750312-chr9:100816953..100823782,17	MCF-7	breast:
6	chr9:100393798..100396909-chr9:100744219..100748139,5	MCF-7	breast:
7	chr9:100437101..100439123-chr9:100743935..100746928,2	K562	blood:
8	chr9:100744384..100747791-chr9:101014978..101019057,4	MCF-7	breast:
9	chr9:100395236..100396868-chr9:100743200..100745382,2	K562	blood:
10	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:
11	chr9:100682507..100691249-chr9:100739828..100748095,35	MCF-7	breast:
12	chr9:100394431..100399065-chr9:100743200..100747046,6	K562	blood:
13	chr9:100743877..100746388-chr9:123637926..123639429,2	K562	blood:

Variant related genes	Relation type
ANP32B	TF binding region
ENSG00000201830	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000231521	Chromatin interaction
ENSG00000119403	Chromatin interaction
ENSG00000136937	Chromatin interaction
ENSG00000095383	Chromatin interaction
ENSG00000136936	Chromatin interaction
ENSG00000136929	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000136925	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893612	chr9:100732802-100754703	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	esv3426844	chr9:100744156-100747104	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases
3	esv3525787	chr9:100744481-100748729	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases
4	esv3525788	chr9:100744481-100748729	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100735800-100744800	Weak transcription	Right Atrium	heart
2	chr9:100740600-100745600	Enhancers	Fetal Brain Male	brain
3	chr9:100741400-100744800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr9:100742600-100744800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:100742600-100744800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:100742600-100744800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr9:100742800-100744800	Flanking Active TSS	NHEK	skin
8	chr9:100743200-100745000	Enhancers	Lung	lung
9	chr9:100743600-100744800	Enhancers	Primary hematopoietic stem cells	blood
10	chr9:100743600-100744800	Enhancers	Left Ventricle	heart
11	chr9:100743600-100744800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:100743800-100744800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:100743800-100744800	Enhancers	Colon Smooth Muscle	Colon
14	chr9:100743800-100745000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:100743800-100745200	Flanking Active TSS	Fetal Thymus	thymus
16	chr9:100744000-100744800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:100744000-100744800	Weak transcription	Esophagus	oesophagus
18	chr9:100744000-100744800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr9:100744000-100744800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr9:100744000-100747800	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr9:100744200-100745000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:100744200-100745200	Flanking Active TSS	GM12878-XiMat	blood
23	chr9:100744200-100745400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr9:100744200-100747800	Active TSS	Fetal Brain Female	brain
25	chr9:100744400-100744800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:100744400-100744800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
27	chr9:100744400-100744800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:100744400-100744800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr9:100744400-100745000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:100744400-100745200	Flanking Active TSS	Dnd41	blood
31	chr9:100744400-100745400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:100744400-100745400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
33	chr9:100744400-100745400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
34	chr9:100744400-100745400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr9:100744400-100745400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:100744400-100747800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
37	chr9:100744600-100744800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:100744600-100744800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:100744600-100744800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr9:100744600-100744800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr9:100744600-100744800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr9:100744600-100744800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
43	chr9:100744600-100744800	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr9:100744600-100744800	Enhancers	Primary B cells from cord blood	blood
45	chr9:100744600-100744800	Enhancers	Primary B cells from peripheral blood	blood
46	chr9:100744600-100744800	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr9:100744600-100744800	Enhancers	Primary T cells fromperipheralblood	blood
48	chr9:100744600-100744800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr9:100744600-100744800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:100744600-100744800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links