Variant report

Variant	rs7770128
Chromosome Location	chr6:35473678-35473679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:35473652-35473778	MCF-7	breast:	n/a	n/a
2	CTCF	chr6:35473660-35473810	SAEC	small airway:	n/a	n/a

Variant related genes	Relation type
TULP1	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2395627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41270076	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57265953	1.00[EUR][1000 genomes]
rs6903482	1.00[EUR][1000 genomes]
rs6906095	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743057	0.87[AMR][1000 genomes]
rs7759599	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
2	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases
3	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
4	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
5	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	esv2761067	chr6:35471246-35573245	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35466400-35476800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:35466400-35479200	Weak transcription	Right Ventricle	heart
3	chr6:35466800-35477000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:35466800-35479400	Weak transcription	Right Atrium	heart
5	chr6:35467400-35478600	Weak transcription	Fetal Lung	lung
6	chr6:35469200-35473800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:35469200-35474200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:35473200-35474200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:35473200-35474200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr6:35473200-35474400	Flanking Bivalent TSS/Enh	HepG2	liver
11	chr6:35473400-35473800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:35473400-35474000	Enhancers	Esophagus	oesophagus
13	chr6:35473400-35479400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:35473600-35473800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:35473600-35473800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:35473600-35473800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:35473600-35473800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
18	chr6:35473600-35473800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:35473600-35473800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:35473600-35474000	Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr6:35473600-35474000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:35473600-35474200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
23	chr6:35473600-35474200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:35473600-35474200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr6:35473600-35474200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:35473600-35474200	Enhancers	HMEC	breast
27	chr6:35473600-35474400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr6:35473600-35474600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:35473600-35474800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
30	chr6:35473600-35477000	Enhancers	HUES6 Cell Line	embryonic stem cell

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