Variant report

Variant	rs7771348
Chromosome Location	chr6:71488306-71488307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71487613..71489472-chr6:71499825..71501970,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16869501	0.95[AFR][1000 genomes]
rs16869513	1.00[AMR][1000 genomes]
rs4995909	1.00[AMR][1000 genomes]
rs6907696	1.00[YRI][hapmap]
rs7753170	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs9446277	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71440400-71488800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:71443200-71488800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:71444800-71523600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:71447800-71500600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:71451800-71488400	Weak transcription	Pancreas	Pancrea
6	chr6:71453000-71489800	Weak transcription	Psoas Muscle	Psoas
7	chr6:71463200-71492600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:71466200-71488400	Weak transcription	Aorta	Aorta
9	chr6:71466400-71493200	Weak transcription	Dnd41	blood
10	chr6:71466400-71494800	Weak transcription	Small Intestine	intestine
11	chr6:71466400-71508800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:71466600-71488600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:71468800-71532200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:71469800-71488400	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:71471200-71490600	Weak transcription	Right Ventricle	heart
16	chr6:71472200-71488400	Weak transcription	Gastric	stomach
17	chr6:71472400-71488400	Weak transcription	Esophagus	oesophagus
18	chr6:71472600-71488400	Weak transcription	Spleen	Spleen
19	chr6:71473000-71515600	Weak transcription	Left Ventricle	heart
20	chr6:71473800-71520200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:71474600-71489000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:71474600-71568800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:71474800-71488400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:71474800-71493400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:71474800-71515000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:71475000-71493800	Weak transcription	Adipose Nuclei	Adipose
27	chr6:71475000-71515200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:71480400-71488800	Weak transcription	Colonic Mucosa	Colon
29	chr6:71481200-71495800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:71481400-71488600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:71481800-71488400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:71481800-71488400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:71481800-71488400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:71481800-71488400	Weak transcription	Fetal Stomach	stomach
35	chr6:71481800-71488800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:71481800-71490000	Weak transcription	Ovary	ovary
37	chr6:71481800-71490800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr6:71481800-71515000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:71482000-71488600	Weak transcription	Fetal Intestine Large	intestine
40	chr6:71482200-71515600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:71482800-71488800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr6:71483000-71488400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:71483000-71515200	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr6:71483200-71491400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:71483600-71488600	Weak transcription	Liver	Liver
46	chr6:71483600-71488800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:71486000-71489000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr6:71486600-71488600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:71486600-71488600	Weak transcription	Brain Germinal Matrix	brain
50	chr6:71486800-71488600	Weak transcription	Primary T cells from cord blood	blood

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