Variant report

Variant	rs77717093
Chromosome Location	chr10:52392908-52392909
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:52389046..52395992-chr10:52408718..52416095,10	K562	blood:
2	chr10:52388132..52389633-chr10:52392535..52394699,2	MCF-7	breast:
3	chr10:52364376..52366700-chr10:52391837..52394497,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ASAH2B-2	chr10:52389337-52401211	ENSG00000226200.2

Variant related genes	Relation type
ENSG00000231345	Chromatin interaction
ENSG00000230036	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv442182	chr10:52391456-52393828	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52385600-52393000	Weak transcription	Pancreas	Pancrea
2	chr10:52385600-52393600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:52385600-52395200	Weak transcription	Esophagus	oesophagus
4	chr10:52385800-52394800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:52385800-52395000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:52385800-52396000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:52385800-52396800	Weak transcription	Fetal Brain Male	brain
8	chr10:52385800-52397000	Weak transcription	Psoas Muscle	Psoas
9	chr10:52385800-52397000	Weak transcription	Small Intestine	intestine
10	chr10:52386000-52393400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:52386000-52394600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:52386000-52394800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:52386000-52394800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:52386000-52394800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:52386000-52394800	Weak transcription	HSMM	muscle
16	chr10:52386000-52395000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:52386000-52395200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr10:52386000-52395800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:52386000-52396000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:52386000-52397000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:52386000-52400400	Weak transcription	Fetal Lung	lung
22	chr10:52386200-52396200	Weak transcription	Primary B cells from cord blood	blood
23	chr10:52386200-52396200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:52386400-52393600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:52388200-52394600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:52388400-52394600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:52389600-52396000	Weak transcription	GM12878-XiMat	blood
28	chr10:52389800-52394400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:52390200-52394000	Weak transcription	Brain Anterior Caudate	brain
30	chr10:52390200-52394200	Weak transcription	Ovary	ovary
31	chr10:52390200-52397000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:52390200-52397000	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:52390400-52393800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr10:52390800-52396600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:52392800-52393000	Enhancers	Aorta	Aorta

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