Variant report

Variant	rs7771861
Chromosome Location	chr6:73941970-73941971
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1055745	0.93[ASN][1000 genomes]
rs12660923	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12661161	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12661261	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12662357	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12662682	1.00[JPT][hapmap]
rs12662803	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12662818	0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[ASN][1000 genomes]
rs12662845	0.80[ASN][1000 genomes]
rs12664116	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16883459	1.00[JPT][hapmap]
rs16883468	1.00[JPT][hapmap]
rs16883471	1.00[JPT][hapmap]
rs16883483	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16883489	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3799281	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3799282	1.00[JPT][hapmap]
rs3799283	1.00[JPT][hapmap]
rs3799284	1.00[JPT][hapmap]
rs3799285	1.00[JPT][hapmap]
rs3799287	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3823120	0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[ASN][1000 genomes]
rs41265511	0.80[ASN][1000 genomes]
rs4631235	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs57258907	0.80[ASN][1000 genomes]
rs58424716	0.80[ASN][1000 genomes]
rs58519898	0.80[ASN][1000 genomes]
rs61240728	0.86[ASN][1000 genomes]
rs6453658	0.85[CHD][hapmap]
rs6919519	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1022151	chr6:73876795-73996828	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv538304	chr6:73876795-73996828	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1030079	chr6:73920050-73984084	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv3475136	chr6:73920540-73953198	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	esv3475137	chr6:73920702-73953146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv886157	chr6:73922561-73969722	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
8	esv3416786	chr6:73925761-73958538	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
9	esv3369132	chr6:73928387-73943734	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3381844	chr6:73929080-73961109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
11	nsv969418	chr6:73941351-73946146	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73934000-73972400	Weak transcription	Ovary	ovary
2	chr6:73938600-73943000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:73941200-73942200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:73941400-73944000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:73941600-73942200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:73941600-73947000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:73941800-73942000	Enhancers	NHDF-Ad	bronchial
8	chr6:73941800-73943600	Weak transcription	Osteobl	bone

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