Variant report

Variant	rs7772949
Chromosome Location	chr6:44259780-44259781
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44257453..44260183-chr6:44326040..44328035,2	MCF-7	breast:
2	chr6:44258945..44261017-chr6:44295322..44296917,2	MCF-7	breast:
3	chr6:44223193..44226100-chr6:44259540..44261376,2	MCF-7	breast:
4	chr6:44258148..44259912-chr6:44267548..44270485,2	MCF-7	breast:
5	chr6:44254194..44256325-chr6:44258837..44260906,2	MCF-7	breast:
6	chr6:44213492..44217926-chr6:44255634..44259894,8	K562	blood:

Variant related genes	Relation type
ENSG00000157593	Chromatin interaction
ENSG00000124608	Chromatin interaction
ENSG00000096384	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12215017	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs324137	0.92[ASN][1000 genomes]
rs324138	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs324139	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs324140	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs324142	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs324144	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs324145	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs324146	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs324147	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs325000	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs325001	0.94[ASN][1000 genomes]
rs325002	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs325004	0.93[ASN][1000 genomes]
rs498512	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs516582	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs557373	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs570469	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs614715	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs651297	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs694349	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs844315	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv462936	chr6:44191920-44282316	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv603004	chr6:44191920-44282316	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
4	nsv885853	chr6:44197181-44274797	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv885854	chr6:44211867-44274797	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
6	nsv462937	chr6:44211867-44279111	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
7	nsv603005	chr6:44211867-44279111	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44244400-44264800	Weak transcription	Right Atrium	heart
2	chr6:44257800-44260400	Enhancers	Fetal Brain Female	brain
3	chr6:44258600-44260000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:44258800-44260200	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links