Variant report

Variant	rs77731089
Chromosome Location	chr1:179723759-179723760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009961	chr1:179714247-179790110	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv33942	chr1:179722838-179724322	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179721600-179723800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:179722400-179723800	Enhancers	Osteobl	bone
3	chr1:179722400-179724000	Enhancers	Colon Smooth Muscle	Colon
4	chr1:179722600-179724000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:179722600-179724000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:179722800-179723800	Enhancers	HSMMtube	muscle
7	chr1:179722800-179724000	Enhancers	Rectal Smooth Muscle	rectum
8	chr1:179723000-179723800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:179723000-179723800	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr1:179723400-179724000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:179723600-179727600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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