Variant report

Variant	rs7773555
Chromosome Location	chr6:24979164-24979165
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24979064..24981330-chr6:25006890..25009589,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13190691	0.82[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.80[MKK][hapmap];0.81[TSI][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35685833	0.90[ASN][1000 genomes]
rs364769	0.92[ASN][1000 genomes]
rs400592	0.92[ASN][1000 genomes]
rs401671	0.90[ASN][1000 genomes]
rs620589	0.88[ASN][1000 genomes]
rs621948	0.85[ASN][1000 genomes]
rs650386	0.85[ASN][1000 genomes]
rs660840	0.92[ASN][1000 genomes]
rs66827126	0.82[ASN][1000 genomes]
rs9295642	0.83[ASN][1000 genomes]
rs9467373	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9467375	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv883482	chr6:24926730-25035920	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1030634	chr6:24938277-25040161	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7773555	GSTM1	trans	parietal	SCAN

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24950400-24988600	Weak transcription	Dnd41	blood
2	chr6:24954400-24980800	Weak transcription	Thymus	Thymus
3	chr6:24969200-24980800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:24969400-24980600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:24973400-24979200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:24975000-24979200	Weak transcription	HSMM	muscle
7	chr6:24975000-24979400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:24975200-24979200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:24975400-24980600	Weak transcription	Primary T cells from cord blood	blood
10	chr6:24975400-24980800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:24975800-24979200	Weak transcription	Primary B cells from cord blood	blood
12	chr6:24975800-24980800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:24976000-24979200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:24976000-24979400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:24976000-24979800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:24976000-24980800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:24976000-24980800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:24976400-24979200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:24976400-24979200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:24976600-24981600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:24977800-24979400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:24977800-24980200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:24977800-24982000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:24977800-24982400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:24977800-24986000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:24978000-24980600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:24978000-24980800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:24978200-24979400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:24978200-24980600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr6:24978200-24981000	Weak transcription	Ovary	ovary
31	chr6:24978800-24980000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr6:24978800-24980400	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr6:24978800-24982000	Enhancers	Primary B cells from peripheral blood	blood
34	chr6:24978800-24989400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr6:24979000-24979600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr6:24979000-24979800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr6:24979000-24979800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr6:24979000-24980000	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr6:24979000-24980400	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr6:24979000-24980800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr6:24979000-24983400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:24979000-24984200	Enhancers	Placenta Amnion	Placenta Amnion
43	chr6:24979000-24988800	Enhancers	Primary T helper cells fromperipheralblood	blood

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