Variant report

Variant	rs7774234
Chromosome Location	chr6:38681447-38681448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10947757	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1579028	0.82[AMR][1000 genomes]
rs4711556	0.82[AMR][1000 genomes]
rs57156564	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60262339	0.82[AMR][1000 genomes]
rs9462451	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9462453	0.87[ASN][1000 genomes]
rs9470917	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9470918	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2758049	chr6:38588969-38711085	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv2759421	chr6:38588969-38711085	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv427754	chr6:38588969-38711085	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv428144	chr6:38588969-38711085	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv830642	chr6:38645056-38800657	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38679200-38681600	Weak transcription	Spleen	Spleen
2	chr6:38681000-38681600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:38681000-38682000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:38681000-38683000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:38681400-38681600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:38681400-38681600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:38681400-38681800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr6:38681400-38682000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr6:38681400-38682200	Enhancers	GM12878-XiMat	blood
10	chr6:38681400-38682400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:38681400-38682600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:38681400-38682600	Enhancers	HUVEC	blood vessel
13	chr6:38681400-38682800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
14	chr6:38681400-38682800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
15	chr6:38681400-38683600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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