Variant report

Variant	rs7774411
Chromosome Location	chr6:13463529-13463530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13463059..13465217-chr6:13614576..13616808,2	MCF-7	breast:
2	chr6:13463240..13466213-chr6:13468578..13470561,2	MCF-7	breast:
3	chr6:13461316..13464526-chr6:13474276..13478535,4	MCF-7	breast:
4	chr6:13458896..13460538-chr6:13462649..13464736,2	K562	blood:

Variant related genes	Relation type
ENSG00000261071	Chromatin interaction
ENSG00000225921	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11964734	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2434393	0.83[AMR][1000 genomes]
rs2434394	0.83[AMR][1000 genomes]
rs2494771	0.83[AMR][1000 genomes]
rs2560750	0.83[AMR][1000 genomes]
rs2560751	0.83[AMR][1000 genomes]
rs2560752	0.83[AMR][1000 genomes]
rs2560753	0.83[AMR][1000 genomes]
rs2560816	0.83[AMR][1000 genomes]
rs2560818	0.83[AMR][1000 genomes]
rs2841553	0.83[AMR][1000 genomes]
rs2841554	0.83[AMR][1000 genomes]
rs2841556	0.83[AMR][1000 genomes]
rs2841557	0.83[AMR][1000 genomes]
rs2841558	0.83[AMR][1000 genomes]
rs2841559	0.83[AMR][1000 genomes]
rs58453010	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59772696	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6931785	0.83[AMR][1000 genomes]
rs73725831	0.83[AMR][1000 genomes]
rs766773	0.83[AMR][1000 genomes]
rs9382115	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv470802	chr6:13441424-13519371	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13452200-13483400	Weak transcription	Gastric	stomach
2	chr6:13454400-13485000	Weak transcription	Colonic Mucosa	Colon
3	chr6:13455200-13466600	Weak transcription	Pancreas	Pancrea
4	chr6:13455200-13484400	Weak transcription	Small Intestine	intestine
5	chr6:13455200-13484600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:13455400-13481000	Weak transcription	HUVEC	blood vessel
7	chr6:13456200-13464400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:13456200-13466200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:13456600-13467200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:13458200-13465600	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:13458200-13465800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:13458200-13466000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:13458200-13466000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:13458200-13466600	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:13458400-13466200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:13459000-13466200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:13461200-13464600	Enhancers	Right Atrium	heart
18	chr6:13461200-13465200	Enhancers	Fetal Lung	lung
19	chr6:13461400-13463600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:13461400-13463600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr6:13461400-13463600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:13461400-13463600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr6:13461400-13463800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:13461400-13463800	Enhancers	Fetal Thymus	thymus
25	chr6:13461400-13464000	Enhancers	Primary B cells from peripheral blood	blood
26	chr6:13461600-13464000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:13461800-13464000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr6:13461800-13464000	Enhancers	Brain Anterior Caudate	brain
29	chr6:13461800-13468000	Enhancers	NHLF	lung
30	chr6:13462000-13463600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:13462000-13463600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:13462000-13463600	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr6:13462000-13463600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:13462000-13463600	Genic enhancers	Adipose Nuclei	Adipose
35	chr6:13462000-13463600	Enhancers	Placenta	Placenta
36	chr6:13462000-13463600	Enhancers	HepG2	liver
37	chr6:13462000-13463800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:13462000-13463800	Enhancers	Brain Angular Gyrus	brain
39	chr6:13462000-13463800	Genic enhancers	Left Ventricle	heart
40	chr6:13462000-13463800	Enhancers	Dnd41	blood
41	chr6:13462000-13464600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr6:13462000-13464800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:13462200-13463600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr6:13462200-13463800	Enhancers	HSMMtube	muscle
45	chr6:13462200-13464800	Enhancers	H9 Cell Line	embryonic stem cell
46	chr6:13462400-13464400	Weak transcription	Aorta	Aorta
47	chr6:13462400-13465800	Weak transcription	Esophagus	oesophagus
48	chr6:13462400-13466400	Weak transcription	Hela-S3	cervix
49	chr6:13462600-13463600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:13462600-13463600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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