Variant report
| Variant | rs7775216 |
|---|---|
| Chromosome Location | chr6:131008621-131008622 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1566182 | 0.83[EUR][1000 genomes] |
| rs1587292 | 0.81[EUR][1000 genomes] |
| rs1813596 | 0.83[EUR][1000 genomes] |
| rs1909075 | 0.82[EUR][1000 genomes] |
| rs1933761 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1933763 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2020093 | 0.83[EUR][1000 genomes] |
| rs2133005 | 0.82[EUR][1000 genomes] |
| rs4632915 | 0.82[EUR][1000 genomes] |
| rs6933692 | 0.81[EUR][1000 genomes] |
| rs7746694 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7747285 | 0.82[EUR][1000 genomes] |
| rs904240 | 0.96[ASN][1000 genomes] |
| rs9321247 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9321248 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9372976 | 0.82[EUR][1000 genomes] |
| rs9375757 | 0.94[ASN][1000 genomes] |
| rs9375758 | 0.85[EUR][1000 genomes] |
| rs9388824 | 0.91[ASN][1000 genomes] |
| rs9388827 | 0.82[EUR][1000 genomes] |
| rs9388828 | 0.82[EUR][1000 genomes] |
| rs9388829 | 0.82[EUR][1000 genomes] |
| rs9388830 | 0.81[EUR][1000 genomes] |
| rs9388831 | 0.85[EUR][1000 genomes] |
| rs9402266 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9402267 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533971 | chr6:130490694-131172051 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv830806 | chr6:130938330-131107137 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv604664 | chr6:131004998-131115817 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:131005600-131017800 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
