Variant report

Variant	rs77754836
Chromosome Location	chr16:12005192-12005193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:11982694..11985676-chr16:12003356..12006033,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043909	chr16:11839910-12007435	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1042660	chr16:11846873-12110435	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv571458	chr16:11925008-12087282	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv1735	chr16:11986963-12031597	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv974848	chr16:12005053-12020022	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:11966200-12006200	Weak transcription	Fetal Heart	heart
2	chr16:11977000-12007200	Weak transcription	Colonic Mucosa	Colon
3	chr16:11982000-12007400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr16:11984600-12006800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr16:11985000-12007000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr16:11987800-12007600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr16:11987800-12008400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:11989800-12007200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr16:11989800-12007400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr16:11990000-12007400	Weak transcription	Lung	lung
11	chr16:11990600-12006600	Weak transcription	Brain Germinal Matrix	brain
12	chr16:11990800-12007000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr16:11991000-12006800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr16:11991000-12007400	Weak transcription	Placenta	Placenta
15	chr16:11991400-12007000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr16:11991600-12006200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr16:11992000-12007000	Weak transcription	Primary B cells from cord blood	blood
18	chr16:11992200-12007000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr16:11996000-12006800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr16:11997200-12006800	Weak transcription	Spleen	Spleen
21	chr16:11997400-12006600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr16:11999800-12008000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr16:12000000-12007400	Weak transcription	HSMMtube	muscle
24	chr16:12000400-12007400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr16:12000600-12006800	Weak transcription	Fetal Stomach	stomach
26	chr16:12000600-12007000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr16:12001400-12006600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr16:12001600-12006200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr16:12001600-12006800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr16:12001800-12006200	Weak transcription	Thymus	Thymus
31	chr16:12001800-12007200	Weak transcription	Fetal Muscle Leg	muscle
32	chr16:12002000-12008200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr16:12002800-12005200	Enhancers	Adipose Nuclei	Adipose
34	chr16:12002800-12005400	Enhancers	Rectal Smooth Muscle	rectum
35	chr16:12002800-12007200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr16:12003000-12005200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr16:12003000-12007000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr16:12003000-12007200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr16:12003000-12007200	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr16:12003200-12005200	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr16:12003200-12005200	Genic enhancers	Hela-S3	cervix
42	chr16:12003200-12005200	Genic enhancers	HepG2	liver
43	chr16:12003200-12006200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr16:12003200-12007200	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr16:12003400-12006400	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr16:12003400-12006600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr16:12003800-12005200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr16:12003800-12005400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr16:12003800-12005400	Enhancers	Stomach Smooth Muscle	stomach
50	chr16:12003800-12005600	Enhancers	Primary T cells from cord blood	blood

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