Variant report

Variant	rs7775887
Chromosome Location	chr6:4914744-4914745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4912937..4915040-chr6:4916951..4919772,2	MCF-7	breast:
2	chr6:4910812..4914843-chr6:4941704..4944145,3	K562	blood:
3	chr6:4909132..4912021-chr6:4912164..4915211,3	K562	blood:
4	chr6:4905151..4907652-chr6:4913182..4915010,2	MCF-7	breast:
5	chr6:4912482..4914985-chr6:4916799..4919032,2	K562	blood:
6	chr6:4907717..4910185-chr6:4913859..4916843,2	MCF-7	breast:
7	chr6:4914506..4916957-chr6:4923942..4927545,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1113341	0.96[ASN][1000 genomes]
rs11242983	0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1891047	0.94[ASN][1000 genomes]
rs4144547	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4437521	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7775887	WRNIP1	cis	cerebellum	SCAN

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4895000-4917000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:4900200-4915200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:4900200-4918800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:4902000-4918400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:4905800-4931200	Weak transcription	HepG2	liver
6	chr6:4907600-4915600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:4907600-4925200	Weak transcription	Fetal Heart	heart
8	chr6:4908000-4935600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:4908200-4917000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:4908200-4934800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:4908600-4914800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:4908800-4915800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:4908800-4920800	Weak transcription	Thymus	Thymus
14	chr6:4908800-4924400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:4909000-4915200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:4909000-4916600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr6:4910800-4916600	Weak transcription	GM12878-XiMat	blood
18	chr6:4911000-4915000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:4911000-4930400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:4911000-4935200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr6:4911800-4915400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:4912200-4915000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:4912400-4915000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:4912400-4915400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:4912400-4915800	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:4912600-4914800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:4912600-4915200	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:4912600-4915400	Enhancers	Left Ventricle	heart
29	chr6:4912800-4915000	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr6:4912800-4916000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:4912800-4916600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:4912800-4931200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:4913000-4915200	Enhancers	Adipose Nuclei	Adipose
34	chr6:4913000-4915400	Enhancers	Fetal Muscle Leg	muscle
35	chr6:4913000-4915800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:4913000-4915800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr6:4913000-4916000	Enhancers	Ovary	ovary
38	chr6:4913000-4917000	Enhancers	Psoas Muscle	Psoas
39	chr6:4913000-4918600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr6:4913200-4914800	Genic enhancers	NHEK	skin
41	chr6:4913200-4915000	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr6:4913200-4915800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:4913200-4936000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:4913200-4941000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:4913400-4914800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:4913400-4915200	Enhancers	Brain Anterior Caudate	brain
47	chr6:4913400-4915400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:4913400-4915600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:4913400-4917000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:4913600-4915200	Enhancers	Brain Substantia Nigra	brain

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