Variant report

Variant	rs7775931
Chromosome Location	chr6:121537195-121537196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12717175	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2133988	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6936507	0.80[AFR][1000 genomes]
rs9372647	0.82[AFR][1000 genomes]
rs9375011	0.80[AFR][1000 genomes]
rs9482122	0.83[EUR][1000 genomes]
rs9490140	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121487400-121556000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:121509600-121575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:121515600-121544200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:121516000-121560200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:121526800-121537400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:121528400-121551800	Weak transcription	Psoas Muscle	Psoas
7	chr6:121532000-121539200	Weak transcription	Fetal Kidney	kidney
8	chr6:121532800-121540000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:121533000-121566800	Weak transcription	Stomach Mucosa	stomach
10	chr6:121534800-121538800	ZNF genes & repeats	Dnd41	blood
11	chr6:121535000-121537400	ZNF genes & repeats	Primary T cells from cord blood	blood
12	chr6:121535000-121537400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:121535000-121569200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:121535400-121537200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:121535400-121537200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr6:121535400-121537200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:121535400-121537200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:121535400-121537200	ZNF genes & repeats	Brain Hippocampus Middle	brain
19	chr6:121535400-121537200	ZNF genes & repeats	Brain Substantia Nigra	brain
20	chr6:121535400-121537400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:121535400-121537400	ZNF genes & repeats	Right Ventricle	heart
22	chr6:121535400-121537400	ZNF genes & repeats	Thymus	Thymus
23	chr6:121535400-121537600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:121535400-121537600	Weak transcription	Fetal Heart	heart
25	chr6:121535400-121538400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
26	chr6:121535600-121537200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
27	chr6:121535600-121537400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
28	chr6:121535600-121537400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
29	chr6:121535600-121537800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
30	chr6:121536200-121537600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr6:121536200-121567200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:121536400-121539000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:121536400-121540800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:121536400-121544200	Weak transcription	Osteobl	bone
35	chr6:121536400-121556200	Weak transcription	Primary B cells from cord blood	blood
36	chr6:121536400-121556200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:121536600-121539800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:121536600-121540200	Strong transcription	Fetal Intestine Large	intestine
39	chr6:121536600-121541400	Weak transcription	Spleen	Spleen
40	chr6:121536600-121544000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:121536600-121545000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:121536600-121556000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:121536600-121556000	Weak transcription	Pancreas	Pancrea
44	chr6:121536600-121556400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:121536600-121556600	Weak transcription	Left Ventricle	heart
46	chr6:121536600-121558400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:121536600-121566000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:121536600-121568200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:121536600-121585400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:121536800-121537200	Strong transcription	Rectal Mucosa Donor 31	rectum

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