Variant report

Variant	rs7776293
Chromosome Location	chr6:166898971-166898972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166893774..166896880-chr6:166897771..166899718,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1569462	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2072831	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3817777	0.93[ASN][1000 genomes]
rs3817782	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3817784	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4709119	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6456088	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909632	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886938	chr6:166859725-166904398	Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886939	chr6:166859725-166922813	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv981091	chr6:166892623-166901005	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
2	chr6:166824000-166901400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:166862400-166900600	Weak transcription	Primary T cells from cord blood	blood
4	chr6:166862400-166920600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:166863600-166900200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:166863600-166902000	Weak transcription	Small Intestine	intestine
7	chr6:166864800-166899800	Weak transcription	Esophagus	oesophagus
8	chr6:166867600-166900000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:166871000-166901400	Weak transcription	Stomach Mucosa	stomach
10	chr6:166872000-166900400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:166872200-166900400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:166873000-166902800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:166874800-166903000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:166875000-166900800	Weak transcription	Fetal Heart	heart
15	chr6:166876000-166901400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:166877200-166904400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:166877200-166908800	Weak transcription	Colonic Mucosa	Colon
18	chr6:166878200-166902000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:166879000-166900600	Weak transcription	Primary B cells from cord blood	blood
20	chr6:166880200-166900000	Weak transcription	Fetal Intestine Large	intestine
21	chr6:166880400-166900000	Weak transcription	Fetal Lung	lung
22	chr6:166880600-166899800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:166880800-166904400	Weak transcription	NH-A	brain
24	chr6:166881400-166904400	Weak transcription	Fetal Kidney	kidney
25	chr6:166883400-166901400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:166883800-166900400	Weak transcription	HUVEC	blood vessel
27	chr6:166884600-166911400	Weak transcription	HMEC	breast
28	chr6:166886600-166901400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr6:166888200-166904400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:166888400-166900200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:166889000-166899800	Weak transcription	Thymus	Thymus
32	chr6:166890600-166925200	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:166891400-166904800	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr6:166892600-166910600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:166893000-166899200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:166893000-166923200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:166893200-166899000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:166893200-166902600	Weak transcription	Aorta	Aorta
39	chr6:166893600-166921400	Weak transcription	Fetal Brain Male	brain
40	chr6:166894800-166900200	Strong transcription	Lung	lung
41	chr6:166894800-166901000	Strong transcription	Left Ventricle	heart
42	chr6:166894800-166901800	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:166894800-166928400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:166895000-166901200	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:166895000-166902000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:166895000-166905000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:166895200-166900800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:166895200-166904600	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr6:166895400-166899400	Strong transcription	Right Ventricle	heart
50	chr6:166895400-166901000	Strong transcription	Ovary	ovary

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