Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr6:25831734-25832595	HepG2	liver:	n/a	n/a
2	EP300	chr6:25832025-25832543	HepG2	liver:	n/a	n/a
3	EBF1	chr6:25831990-25832339	GM12878	blood:	n/a	chr6:25832167-25832178
4	CTCF	chr6:25831960-25832110	A549	lung:	n/a	n/a
5	POLR2A	chr6:25832019-25832644	HepG2	liver:	n/a	n/a
6	CTCF	chr6:25832020-25832170	Caco-2	colon:	n/a	n/a
7	HEY1	chr6:25831682-25833103	HepG2	liver:	n/a	n/a
8	MYBL2	chr6:25831920-25832634	HepG2	liver:	n/a	n/a
9	CTCF	chr6:25831900-25832150	HepG2	liver:	n/a	n/a
10	FOXA1	chr6:25832027-25832541	HepG2	liver:	n/a	n/a
11	NFIC	chr6:25831825-25832656	HepG2	liver:	n/a	n/a
12	EBF1	chr6:25832049-25832260	GM12878	blood:	n/a	chr6:25832167-25832178
13	CTCF	chr6:25831980-25832130	HEK293	kidney:	n/a	n/a
14	POLR2A	chr6:25831675-25832605	HepG2	liver:	n/a	n/a
15	FOXA1	chr6:25831991-25832590	HepG2	liver:	n/a	n/a
16	FOXA1	chr6:25832008-25832595	HepG2	liver:	n/a	n/a
17	SP1	chr6:25831785-25832652	HepG2	liver:	n/a	n/a
18	MBD4	chr6:25831582-25832589	HepG2	liver:	n/a	n/a
19	EP300	chr6:25831994-25832570	HepG2	liver:	n/a	n/a
20	CTCF	chr6:25832020-25832170	HRE	kidney:	n/a	n/a

Variant related genes	Relation type
SLC17A1	TF binding region

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs28433902	1.00[EUR][1000 genomes]
rs4379284	1.00[EUR][1000 genomes]
rs4484510	1.00[EUR][1000 genomes]
rs6924093	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6927402	1.00[EUR][1000 genomes]
rs6933573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73383224	1.00[EUR][1000 genomes]
rs73383248	1.00[EUR][1000 genomes]
rs73383256	1.00[EUR][1000 genomes]
rs73383283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73383287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385008	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73385013	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385016	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385046	1.00[EUR][1000 genomes]
rs73385068	1.00[EUR][1000 genomes]
rs73385070	1.00[EUR][1000 genomes]
rs73385071	1.00[EUR][1000 genomes]
rs7741430	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7765800	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9393666	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv427747	chr6:25641380-25908218	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25830800-25832400	Flanking Active TSS	Liver	Liver
2	chr6:25830800-25833000	Active TSS	Fetal Kidney	kidney
3	chr6:25831200-25832200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr6:25831200-25833200	Enhancers	Fetal Intestine Small	intestine
5	chr6:25831400-25833200	Flanking Active TSS	HepG2	liver
6	chr6:25831800-25833800	Enhancers	Fetal Intestine Large	intestine
7	chr6:25832000-25832400	Flanking Active TSS	A549	lung

Quick Search: