Variant report

Variant	rs7776722
Chromosome Location	chr7:6024859-6024860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11972027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974287	1.00[AMR][1000 genomes]
rs11980833	1.00[AMR][1000 genomes]
rs13309885	1.00[AMR][1000 genomes]
rs17136039	1.00[AMR][1000 genomes]
rs34260367	1.00[AMR][1000 genomes]
rs6957141	1.00[AMR][1000 genomes]
rs6957720	1.00[AMR][1000 genomes]
rs6957737	1.00[AMR][1000 genomes]
rs6970518	1.00[AMR][1000 genomes]
rs7781006	1.00[AMR][1000 genomes]
rs7786901	1.00[AMR][1000 genomes]
rs7798762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530983	chr7:5370746-6070852	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	368 gene(s)	inside rSNPs	diseases
2	nsv533108	chr7:5488018-6316581	Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	390 gene(s)	inside rSNPs	diseases
3	nsv1033556	chr7:5565080-6186815	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
4	nsv538710	chr7:5565080-6186815	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
5	nsv1021989	chr7:5629728-6186815	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
6	nsv1034215	chr7:5748982-6056619	Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
7	nsv1016690	chr7:5749222-6056619	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
8	nsv1027679	chr7:5760731-6056619	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
9	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
10	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
11	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
12	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
13	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
14	nsv433017	chr7:5853557-6045391	Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv1017061	chr7:5885326-6026706	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv830894	chr7:5889658-6072215	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
17	nsv1034916	chr7:5934780-6158970	Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
18	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
19	nsv970789	chr7:5958445-6027048	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6010200-6026600	Weak transcription	Lung	lung
2	chr7:6010200-6026800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:6010400-6026200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:6010400-6026600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:6010400-6028600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:6010400-6048000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:6011400-6026600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:6012400-6028800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:6014600-6027200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:6015000-6026400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr7:6015200-6026600	Weak transcription	Spleen	Spleen
12	chr7:6015200-6028600	Weak transcription	Gastric	stomach
13	chr7:6015600-6026200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:6015600-6026600	Weak transcription	Brain Germinal Matrix	brain
15	chr7:6015800-6026600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:6015800-6033600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:6016000-6026400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:6016000-6028600	Weak transcription	Brain Substantia Nigra	brain
19	chr7:6016200-6026400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:6016200-6026400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr7:6016200-6026400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr7:6016200-6026400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:6016200-6026400	Weak transcription	Placenta	Placenta
24	chr7:6016200-6026400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:6016200-6026600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:6016200-6026800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr7:6016200-6027800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr7:6016200-6028800	Weak transcription	Fetal Lung	lung
29	chr7:6016200-6029400	Weak transcription	A549	lung
30	chr7:6016200-6029400	Weak transcription	Hela-S3	cervix
31	chr7:6016200-6047600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:6016400-6026400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr7:6016600-6026600	Weak transcription	Ovary	ovary
34	chr7:6016600-6033800	Weak transcription	GM12878-XiMat	blood
35	chr7:6016800-6026400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:6016800-6026400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:6016800-6026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr7:6017000-6026600	Weak transcription	Osteobl	bone
39	chr7:6017000-6026800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr7:6017000-6035000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:6017400-6038600	Weak transcription	Brain Angular Gyrus	brain
42	chr7:6017600-6028000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr7:6017800-6028600	Weak transcription	Brain Hippocampus Middle	brain
44	chr7:6017800-6030200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr7:6018000-6026400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:6018000-6026400	Weak transcription	Liver	Liver
47	chr7:6018000-6028600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr7:6018000-6033600	Weak transcription	HUVEC	blood vessel
49	chr7:6018200-6026400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:6018200-6034400	Weak transcription	K562	blood

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