Variant report

Variant	rs7777486
Chromosome Location	chr7:96500818-96500819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96499687..96501600-chr7:96503394..96505402,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12537923	0.86[AFR][1000 genomes]
rs12540421	0.86[AFR][1000 genomes]
rs12540422	0.86[AFR][1000 genomes]
rs1375671	0.86[AFR][1000 genomes]
rs1375672	0.86[AFR][1000 genomes]
rs16869160	0.86[AFR][1000 genomes]
rs17167890	0.88[AFR][1000 genomes]
rs193268	0.86[AFR][1000 genomes]
rs2394554	0.88[AFR][1000 genomes]
rs2394555	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs352664	0.86[AFR][1000 genomes]
rs352667	0.86[AFR][1000 genomes]
rs4727350	0.85[AFR][1000 genomes]
rs4727351	0.86[AFR][1000 genomes]
rs4729305	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729315	0.86[AFR][1000 genomes]
rs4729316	0.86[AFR][1000 genomes]
rs4729317	0.86[AFR][1000 genomes]
rs4729318	0.86[AFR][1000 genomes]
rs6465558	0.86[AFR][1000 genomes]
rs6465559	0.86[AFR][1000 genomes]
rs6465560	0.86[AFR][1000 genomes]
rs6465561	0.86[AFR][1000 genomes]
rs6465562	0.86[AFR][1000 genomes]
rs6465564	0.83[AFR][1000 genomes]
rs6465565	0.86[AFR][1000 genomes]
rs6950597	0.86[AFR][1000 genomes]
rs6955035	0.86[AFR][1000 genomes]
rs6955143	0.85[AFR][1000 genomes]
rs6955254	0.86[AFR][1000 genomes]
rs6955262	0.85[AFR][1000 genomes]
rs6956115	0.86[AFR][1000 genomes]
rs6960604	0.86[AFR][1000 genomes]
rs6960757	0.86[AFR][1000 genomes]
rs6972627	0.86[AFR][1000 genomes]
rs7456227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7777257	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7792791	0.86[AFR][1000 genomes]
rs7803481	0.86[AFR][1000 genomes]
rs7809288	0.86[AFR][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs7777486	ZSCAN21	cis	cerebellum	SCAN
rs7777486	PDAP1	cis	cerebellum	SCAN
rs7777486	PON1	cis	cerebellum	SCAN
rs7777486	COL1A2	cis	parietal	SCAN
rs7777486	ARPC1A	cis	cerebellum	SCAN
rs7777486	ZNF498	cis	parietal	SCAN
rs7777486	PVRIG	cis	parietal	SCAN
rs7777486	ZC3H14	trans	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96499200-96501000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:96499400-96501000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:96499400-96501000	Enhancers	NHEK	skin
4	chr7:96499400-96501200	Enhancers	HMEC	breast
5	chr7:96499600-96501000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:96500200-96501200	Enhancers	Placenta	Placenta

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