Variant report

Variant	rs777832
Chromosome Location	chr8:116234526-116234527
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1083385	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1083386	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1691188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs777830	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs777833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs777834	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891373	chr8:115351857-116295809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv891399	chr8:116037798-116295809	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv891400	chr8:116139213-116373329	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv831431	chr8:116209344-116402304	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1024074	chr8:116211511-116387442	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:116230200-116236000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr8:116230400-116236000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr8:116230600-116235600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:116230600-116236000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:116231200-116236000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:116231400-116237600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:116231600-116234600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:116231600-116234600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:116231600-116234600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:116232000-116234600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:116232000-116235000	Weak transcription	Osteobl	bone
12	chr8:116233800-116235600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr8:116233800-116236000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr8:116234000-116235000	Flanking Active TSS	GM12878-XiMat	blood
15	chr8:116234000-116235600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr8:116234000-116236000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr8:116234200-116234800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr8:116234200-116234800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:116234200-116234800	Enhancers	Spleen	Spleen
20	chr8:116234200-116235600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr8:116234200-116235800	Enhancers	Primary B cells from cord blood	blood
22	chr8:116234200-116235800	Enhancers	Primary B cells from peripheral blood	blood
23	chr8:116234400-116235000	Enhancers	Primary hematopoietic stem cells	blood
24	chr8:116234400-116235200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:116234400-116235400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:116234400-116235400	Enhancers	Fetal Thymus	thymus
27	chr8:116234400-116235600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr8:116234400-116235600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr8:116234400-116235600	Enhancers	Duodenum Mucosa	Duodenum
30	chr8:116234400-116235600	Flanking Active TSS	Dnd41	blood
31	chr8:116234400-116236000	Enhancers	Primary T cells from cord blood	blood

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