Variant report

Variant	rs7778340
Chromosome Location	chr7:27981667-27981668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10951187	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11763181	1.00[CEU][hapmap]
rs12538288	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1557779	0.85[CEU][hapmap]
rs1859109	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs191	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs197	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs200	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs201	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs205	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs207	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs208	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2097737	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs211	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs213	0.85[CEU][hapmap]
rs214	1.00[AFR][1000 genomes]
rs215	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs218	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4722746	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6462060	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6951040	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6955462	0.82[CEU][hapmap]
rs6958293	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6968362	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs6968677	1.00[CEU][hapmap]
rs6969949	0.85[CEU][hapmap]
rs6970113	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6972944	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083394	0.87[EUR][1000 genomes]
rs7783410	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7787507	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs916854	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1024819	chr7:27949955-28020969	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27941400-27990800	Weak transcription	Primary T cells from cord blood	blood
2	chr7:27942400-28005600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr7:27957600-28000800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:27961000-27983400	Weak transcription	NH-A	brain
5	chr7:27973600-27982600	Weak transcription	Spleen	Spleen
6	chr7:27973800-27986200	Weak transcription	HSMM	muscle
7	chr7:27974000-27990800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:27975600-27984800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:27976200-27987400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:27976400-27981800	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:27976600-27981800	Weak transcription	Fetal Lung	lung
12	chr7:27976600-27991600	Weak transcription	Osteobl	bone
13	chr7:27976800-27982200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:27977000-27983600	Weak transcription	Psoas Muscle	Psoas
15	chr7:27977000-27983600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:27977000-28001400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:27977200-27986400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:27977400-27991600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:27978600-27993000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr7:27979000-27981800	Enhancers	Colon Smooth Muscle	Colon
21	chr7:27979000-27984800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:27979200-27982400	Weak transcription	Right Atrium	heart
23	chr7:27979200-27985600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr7:27979200-28000000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:27979400-27981800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:27979600-27983000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:27980000-27982000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:27980000-27984600	Strong transcription	Primary B cells from cord blood	blood
29	chr7:27980000-27986000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr7:27980200-27982000	Enhancers	Brain Cingulate Gyrus	brain
31	chr7:27980200-27984800	Weak transcription	Right Ventricle	heart
32	chr7:27980200-27987400	Weak transcription	Gastric	stomach
33	chr7:27980200-28000000	Weak transcription	Lung	lung
34	chr7:27980400-27981800	Enhancers	Brain Substantia Nigra	brain
35	chr7:27980400-27982000	Enhancers	Brain Hippocampus Middle	brain
36	chr7:27980400-27982400	Weak transcription	Left Ventricle	heart
37	chr7:27980400-27983200	Weak transcription	Fetal Heart	heart
38	chr7:27980400-27986000	Weak transcription	Fetal Stomach	stomach
39	chr7:27980400-27987600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr7:27980400-27988800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:27980400-28000000	Weak transcription	Pancreas	Pancrea
42	chr7:27980400-28017200	Weak transcription	Aorta	Aorta
43	chr7:27980600-27993400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr7:27980800-27981800	Enhancers	Brain Angular Gyrus	brain
45	chr7:27980800-27984200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr7:27981000-27984400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:27981000-27984600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:27981000-27984600	Enhancers	Adipose Nuclei	Adipose
49	chr7:27981000-27984600	Enhancers	NHDF-Ad	bronchial
50	chr7:27981200-27981800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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