Variant report

Variant	rs7778401
Chromosome Location	chr7:22394342-22394343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22387545..22389615-chr7:22393294..22394919,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10257172	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12539362	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6976502	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22369400-22394800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:22383000-22395200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:22384200-22395800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:22384800-22395000	Weak transcription	Thymus	Thymus
5	chr7:22388400-22395000	Weak transcription	Esophagus	oesophagus
6	chr7:22390600-22395200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:22390800-22395000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:22391200-22395200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:22391600-22394800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:22391800-22394800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:22391800-22395000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:22391800-22395200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:22392400-22396200	Transcr. at gene 5' and 3'	Dnd41	blood
14	chr7:22392600-22394400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr7:22392600-22394800	ZNF genes & repeats	GM12878-XiMat	blood
16	chr7:22392600-22395000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:22392800-22394400	Weak transcription	Fetal Intestine Large	intestine
18	chr7:22393400-22394400	Transcr. at gene 5' and 3'	HepG2	liver
19	chr7:22393600-22394400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
20	chr7:22393600-22394600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr7:22393600-22394600	ZNF genes & repeats	Fetal Thymus	thymus
22	chr7:22393800-22395000	Enhancers	Pancreas	Pancrea
23	chr7:22393800-22397000	Active TSS	Brain Anterior Caudate	brain
24	chr7:22394000-22395800	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr7:22394200-22394600	ZNF genes & repeats	Adipose Nuclei	Adipose
26	chr7:22394200-22395000	Enhancers	Fetal Intestine Small	intestine
27	chr7:22394200-22397000	Active TSS	Brain Angular Gyrus	brain

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