Variant report

Variant	rs77784076
Chromosome Location	chr4:110396223-110396224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:110387620..110389236-chr4:110394728..110397410,2	K562	blood:
2	chr4:110362207..110365023-chr4:110395130..110397808,3	K562	blood:
3	chr4:110384184..110389120-chr4:110389509..110396492,10	K562	blood:
4	chr4:110391073..110393458-chr4:110395121..110397973,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv525385	chr4:110395146-110466413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110363600-110398400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:110378800-110415800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:110383400-110397600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr4:110384800-110399800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:110384800-110401000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:110385400-110402800	Weak transcription	Brain Germinal Matrix	brain
7	chr4:110385400-110403000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:110385600-110415800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:110385600-110415800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:110385600-110415800	Weak transcription	Esophagus	oesophagus
11	chr4:110385800-110398200	Weak transcription	Fetal Intestine Small	intestine
12	chr4:110385800-110415600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:110385800-110415800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:110385800-110415800	Weak transcription	Colonic Mucosa	Colon
15	chr4:110386000-110415800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:110386200-110415800	Weak transcription	Lung	lung
17	chr4:110386200-110415800	Weak transcription	Spleen	Spleen
18	chr4:110386400-110398400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr4:110386400-110413600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr4:110386400-110415600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr4:110386400-110415800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:110386600-110402400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:110386600-110415600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr4:110386800-110398000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr4:110386800-110402400	Weak transcription	Fetal Lung	lung
26	chr4:110386800-110405200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr4:110386800-110415600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:110387000-110402200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr4:110387000-110402200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr4:110387000-110402800	Weak transcription	Brain Angular Gyrus	brain
31	chr4:110387000-110415600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:110387000-110415800	Weak transcription	Fetal Brain Male	brain
33	chr4:110387000-110415800	Weak transcription	Fetal Brain Female	brain
34	chr4:110387000-110416400	Weak transcription	Right Ventricle	heart
35	chr4:110387200-110415600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:110387600-110415600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr4:110388000-110403600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:110389200-110396600	Strong transcription	Dnd41	blood
39	chr4:110389200-110398000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr4:110389400-110398800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr4:110389400-110402200	Weak transcription	Primary hematopoietic stem cells	blood
42	chr4:110390000-110415400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr4:110391600-110402000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr4:110391800-110415400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr4:110391800-110415600	Weak transcription	Ovary	ovary
46	chr4:110392800-110396600	Strong transcription	Primary B cells from peripheral blood	blood
47	chr4:110393000-110415600	Weak transcription	Fetal Stomach	stomach
48	chr4:110393000-110415600	Weak transcription	Thymus	Thymus
49	chr4:110393000-110415800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr4:110393000-110415800	Weak transcription	Gastric	stomach

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