Variant report

Variant	rs7778669
Chromosome Location	chr7:140002225-140002226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28483540	0.81[AMR][1000 genomes]
rs7795852	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805584	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139975600-140002600	Weak transcription	Right Atrium	heart
2	chr7:139986800-140007800	Weak transcription	Fetal Intestine Small	intestine
3	chr7:139994600-140004000	Weak transcription	K562	blood
4	chr7:139999600-140008800	Weak transcription	Colonic Mucosa	Colon
5	chr7:139999800-140002400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr7:139999800-140004200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr7:140000200-140004200	Enhancers	HepG2	liver
8	chr7:140000600-140003400	Weak transcription	Primary B cells from cord blood	blood
9	chr7:140001600-140002400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr7:140002200-140003400	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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