Variant report

Variant	rs7778864
Chromosome Location	chr7:111699428-111699429
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:111696985..111699973-chr7:111702426..111704136,2	K562	blood:
2	chr7:111679099..111681078-chr7:111697466..111700106,2	MCF-7	breast:
3	chr7:111694475..111696328-chr7:111697241..111699580,2	K562	blood:
4	chr7:111667061..111669402-chr7:111698388..111701090,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10242194	0.90[ASN][1000 genomes]
rs10242337	0.90[ASN][1000 genomes]
rs10247033	0.91[ASN][1000 genomes]
rs10258545	0.92[ASN][1000 genomes]
rs10261950	0.92[ASN][1000 genomes]
rs10262170	0.83[ASN][1000 genomes]
rs10279995	0.91[ASN][1000 genomes]
rs11973245	0.83[ASN][1000 genomes]
rs12671036	0.88[ASN][1000 genomes]
rs12673764	0.86[ASN][1000 genomes]
rs12673819	0.98[ASN][1000 genomes]
rs4730506	0.89[ASN][1000 genomes]
rs4730507	0.92[ASN][1000 genomes]
rs4730508	0.96[ASN][1000 genomes]
rs55864601	0.97[ASN][1000 genomes]
rs58373588	0.85[ASN][1000 genomes]
rs6466396	0.87[ASN][1000 genomes]
rs6958532	0.87[ASN][1000 genomes]
rs6962255	0.87[ASN][1000 genomes]
rs72603556	0.81[ASN][1000 genomes]
rs7793681	0.91[ASN][1000 genomes]
rs7796169	0.81[ASN][1000 genomes]
rs7797442	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7802310	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608196	chr7:111073710-111794368	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1015267	chr7:111303294-111714771	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539087	chr7:111303294-111714771	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539088	chr7:111333899-111722341	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv533924	chr7:111529515-111784369	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	nsv1023261	chr7:111593889-111780337	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv1016663	chr7:111622107-111813223	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv1034249	chr7:111656902-111748774	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv539089	chr7:111656902-111748774	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv889054	chr7:111666943-111739842	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv1844097	chr7:111686153-111723488	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111678800-111701200	Weak transcription	Right Atrium	heart
2	chr7:111688200-111705200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:111691000-111700200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:111691400-111701200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:111693800-111700600	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:111694000-111699600	Weak transcription	Brain Substantia Nigra	brain
7	chr7:111694000-111700400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:111694000-111701200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:111694000-111701400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:111694000-111704400	Weak transcription	Brain Angular Gyrus	brain
11	chr7:111694000-111712200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:111694000-111714600	Weak transcription	Aorta	Aorta
13	chr7:111694200-111706200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:111694200-111712600	Weak transcription	Pancreas	Pancrea
15	chr7:111695600-111701200	Weak transcription	Lung	lung
16	chr7:111696800-111700000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:111696800-111704800	Weak transcription	NHEK	skin
18	chr7:111696800-111709000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr7:111697600-111701200	Weak transcription	Left Ventricle	heart
20	chr7:111698200-111702000	Enhancers	HepG2	liver
21	chr7:111698400-111699800	Enhancers	HUVEC	blood vessel
22	chr7:111698600-111701800	Enhancers	Brain Hippocampus Middle	brain
23	chr7:111699000-111699800	Weak transcription	Brain Anterior Caudate	brain
24	chr7:111699000-111700600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:111699000-111700600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr7:111699000-111700600	Weak transcription	A549	lung
27	chr7:111699200-111699800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr7:111699200-111700600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:111699400-111700600	Weak transcription	Ovary	ovary
30	chr7:111699400-111701200	Weak transcription	Psoas Muscle	Psoas

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