Variant report

Variant	rs7779758
Chromosome Location	chr7:13150533-13150534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13146440..13148600-chr7:13150373..13152655,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10950437	0.83[EUR][1000 genomes]
rs10950438	0.82[EUR][1000 genomes]
rs10950439	0.83[EUR][1000 genomes]
rs10950440	0.83[EUR][1000 genomes]
rs12112570	0.81[EUR][1000 genomes]
rs12113090	0.83[EUR][1000 genomes]
rs12531362	0.83[EUR][1000 genomes]
rs12531363	0.83[EUR][1000 genomes]
rs12532331	0.83[EUR][1000 genomes]
rs12537114	0.83[EUR][1000 genomes]
rs12538973	0.83[EUR][1000 genomes]
rs12540259	0.83[EUR][1000 genomes]
rs12669843	0.83[EUR][1000 genomes]
rs12671645	0.83[EUR][1000 genomes]
rs12674018	0.83[EUR][1000 genomes]
rs13231946	0.81[EUR][1000 genomes]
rs17166738	0.83[EUR][1000 genomes]
rs17166756	0.83[EUR][1000 genomes]
rs1981639	0.83[EUR][1000 genomes]
rs2058152	0.83[EUR][1000 genomes]
rs2058154	0.83[EUR][1000 genomes]
rs2191043	0.83[EUR][1000 genomes]
rs2357197	0.83[EUR][1000 genomes]
rs2357198	0.83[EUR][1000 genomes]
rs2884118	0.83[EUR][1000 genomes]
rs55858291	0.83[EUR][1000 genomes]
rs55953034	0.83[EUR][1000 genomes]
rs56868702	0.82[EUR][1000 genomes]
rs57502698	0.83[EUR][1000 genomes]
rs57879982	0.83[EUR][1000 genomes]
rs59239360	0.83[EUR][1000 genomes]
rs59601961	0.83[EUR][1000 genomes]
rs60007632	0.83[EUR][1000 genomes]
rs61403192	0.83[EUR][1000 genomes]
rs61652670	0.83[EUR][1000 genomes]
rs6461006	0.83[EUR][1000 genomes]
rs6943435	0.83[EUR][1000 genomes]
rs6948241	0.81[EUR][1000 genomes]
rs6949879	0.83[EUR][1000 genomes]
rs6950414	0.83[EUR][1000 genomes]
rs6954638	0.83[EUR][1000 genomes]
rs6962417	0.81[EUR][1000 genomes]
rs6964122	0.83[EUR][1000 genomes]
rs6964875	0.83[EUR][1000 genomes]
rs6967484	0.83[EUR][1000 genomes]
rs6971600	0.83[EUR][1000 genomes]
rs6974627	0.83[EUR][1000 genomes]
rs73257863	0.83[EUR][1000 genomes]
rs73257875	0.83[EUR][1000 genomes]
rs73259893	0.83[EUR][1000 genomes]
rs73259902	0.83[EUR][1000 genomes]
rs73261810	0.83[EUR][1000 genomes]
rs73261821	0.81[EUR][1000 genomes]
rs73261823	0.83[EUR][1000 genomes]
rs73261882	0.83[EUR][1000 genomes]
rs73261884	0.83[EUR][1000 genomes]
rs73261897	0.83[EUR][1000 genomes]
rs73261902	0.83[EUR][1000 genomes]
rs7777803	0.82[EUR][1000 genomes]
rs7777806	0.83[EUR][1000 genomes]
rs7777981	0.83[EUR][1000 genomes]
rs7777989	0.83[EUR][1000 genomes]
rs7778130	0.83[EUR][1000 genomes]
rs7781945	0.83[EUR][1000 genomes]
rs7782554	0.83[EUR][1000 genomes]
rs7783033	0.83[EUR][1000 genomes]
rs7783642	0.84[EUR][1000 genomes]
rs7784807	0.83[EUR][1000 genomes]
rs7784901	0.83[EUR][1000 genomes]
rs7788484	0.83[EUR][1000 genomes]
rs7788862	0.83[EUR][1000 genomes]
rs7789970	0.83[EUR][1000 genomes]
rs7790328	0.83[EUR][1000 genomes]
rs7790665	0.83[EUR][1000 genomes]
rs7790770	0.83[EUR][1000 genomes]
rs7790911	0.83[EUR][1000 genomes]
rs7799356	0.83[EUR][1000 genomes]
rs7799376	0.83[EUR][1000 genomes]
rs7799629	0.83[EUR][1000 genomes]
rs7803001	0.83[EUR][1000 genomes]
rs9639142	0.83[EUR][1000 genomes]
rs9639143	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1029771	chr7:12927648-13153855	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv538736	chr7:12927648-13153855	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1019173	chr7:13063854-13585360	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv538737	chr7:13063854-13585360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv887643	chr7:13086613-13211263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv437536	chr7:13100035-13152162	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1034496	chr7:13102902-13275542	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1030795	chr7:13111069-13242350	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1019238	chr7:13129616-13248483	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv2764039	chr7:13130069-13224373	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1020790	chr7:13130069-13365778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv887644	chr7:13130646-13220153	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv887645	chr7:13132400-13220153	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv887646	chr7:13137142-13237390	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv967427	chr7:13139839-13155007	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv1015724	chr7:13143412-13242350	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv887647	chr7:13146222-13262586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv366515	chr7:13150534-13150548	Weak transcription	Chromatin interactive region	n/a	n/a	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13149200-13154600	Weak transcription	HepG2	liver
2	chr7:13150000-13150800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:13150000-13154400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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