Variant report

Variant	rs7780213
Chromosome Location	chr7:140268020-140268021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10227869	1.00[AMR][1000 genomes]
rs10255623	1.00[AMR][1000 genomes]
rs10273005	1.00[AMR][1000 genomes]
rs11983453	1.00[AMR][1000 genomes]
rs55816014	1.00[AMR][1000 genomes]
rs56711326	1.00[AMR][1000 genomes]
rs59489402	1.00[AMR][1000 genomes]
rs6951766	1.00[AMR][1000 genomes]
rs6972562	1.00[AMR][1000 genomes]
rs6979290	1.00[AMR][1000 genomes]
rs7795017	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802929	chr7:140212566-140285491	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140247000-140276400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:140247000-140297400	Weak transcription	Spleen	Spleen
3	chr7:140259600-140268200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:140260200-140273400	Weak transcription	Fetal Brain Male	brain
5	chr7:140261800-140284000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:140263000-140268600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:140263400-140278400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:140263800-140270400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:140263800-140274800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:140263800-140276000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:140263800-140277800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:140263800-140286800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:140263800-140303600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:140263800-140303600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:140263800-140305200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:140263800-140305600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:140264000-140269600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:140264000-140272800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:140264600-140268400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:140264600-140290400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:140265200-140271400	Weak transcription	Fetal Kidney	kidney
22	chr7:140265200-140272800	Weak transcription	Brain Substantia Nigra	brain
23	chr7:140265200-140304400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:140265400-140271400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr7:140265800-140268400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:140265800-140274000	Strong transcription	Fetal Brain Female	brain
27	chr7:140266200-140268600	Enhancers	Fetal Heart	heart
28	chr7:140266200-140268800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:140266200-140275400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:140266400-140285200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:140266600-140269800	Enhancers	Placenta	Placenta
32	chr7:140266600-140270600	Enhancers	Left Ventricle	heart
33	chr7:140266600-140273200	Weak transcription	Fetal Intestine Large	intestine
34	chr7:140266800-140268200	Enhancers	Adipose Nuclei	Adipose
35	chr7:140266800-140268400	Enhancers	Lung	lung
36	chr7:140266800-140268600	Enhancers	Right Atrium	heart
37	chr7:140266800-140269600	Enhancers	Right Ventricle	heart
38	chr7:140267000-140268200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:140267000-140268400	Genic enhancers	Fetal Muscle Trunk	muscle
40	chr7:140267000-140270400	Strong transcription	Fetal Intestine Small	intestine
41	chr7:140267400-140268800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr7:140267600-140268200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr7:140267600-140271400	Weak transcription	HMEC	breast
44	chr7:140267600-140271600	Weak transcription	Brain Anterior Caudate	brain
45	chr7:140267600-140272600	Weak transcription	NHDF-Ad	bronchial
46	chr7:140267600-140272800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr7:140267600-140272800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr7:140267600-140274800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr7:140267600-140281000	Strong transcription	Fetal Muscle Leg	muscle
50	chr7:140267800-140268200	Weak transcription	Ovary	ovary

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