Variant report

Variant	rs7780301
Chromosome Location	chr7:105574243-105574244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:105526646..105528203-chr7:105571811..105574702,2	MCF-7	breast:
2	chr7:105573338..105574980-chr7:105579109..105580848,2	MCF-7	breast:
3	chr7:105566150..105568635-chr7:105572225..105574971,2	MCF-7	breast:
4	chr7:105572366..105575120-chr7:105681796..105683797,2	MCF-7	breast:
5	chr7:105554741..105557044-chr7:105574142..105576076,2	MCF-7	breast:
6	chr7:105573874..105581141-chr7:105646643..105653453,14	MCF-7	breast:
7	chr6:26156554..26158988-chr7:105571670..105574632,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RINT1-4	chr7:105573258-105575057	NONHSAT122636

No data

Variant related genes	Relation type
ENSG00000158373	Chromatin interaction
ENSG00000168298	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17152350	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17152355	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55785723	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	esv3435895	chr7:105564407-105908056	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105547000-105577800	Weak transcription	Gastric	stomach
2	chr7:105551800-105580600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:105561600-105575200	Weak transcription	HepG2	liver
4	chr7:105564600-105574600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:105564800-105575000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:105565200-105575200	Weak transcription	Liver	Liver
7	chr7:105565200-105575400	Weak transcription	Fetal Intestine Large	intestine
8	chr7:105566000-105577400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:105566000-105586400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:105567200-105575200	Weak transcription	Primary T cells from cord blood	blood
11	chr7:105567400-105574800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:105567400-105575200	Weak transcription	Pancreas	Pancrea
13	chr7:105567400-105575400	Weak transcription	Fetal Intestine Small	intestine
14	chr7:105571400-105576600	Enhancers	NHDF-Ad	bronchial
15	chr7:105571800-105574400	Enhancers	Fetal Brain Female	brain
16	chr7:105572400-105574400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:105572400-105574400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:105572400-105575400	Enhancers	Rectal Smooth Muscle	rectum
19	chr7:105572400-105575600	Enhancers	Osteobl	bone
20	chr7:105572600-105574400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr7:105572600-105574400	Enhancers	HSMM	muscle
22	chr7:105572600-105574600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr7:105572600-105574600	Enhancers	NHLF	lung
24	chr7:105572600-105575600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:105572600-105575600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr7:105572600-105576600	Enhancers	Stomach Smooth Muscle	stomach
27	chr7:105572800-105574400	Enhancers	HMEC	breast
28	chr7:105572800-105576200	Enhancers	Colon Smooth Muscle	Colon
29	chr7:105573000-105574400	Enhancers	HSMMtube	muscle
30	chr7:105573200-105574400	Enhancers	Brain Germinal Matrix	brain
31	chr7:105573200-105575200	Weak transcription	Brain Angular Gyrus	brain
32	chr7:105573200-105575600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:105573200-105576800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr7:105573400-105574600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr7:105573400-105576200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr7:105573400-105579800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr7:105573600-105574400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:105573600-105574400	Enhancers	Fetal Muscle Trunk	muscle
39	chr7:105573600-105574800	Enhancers	H1 Cell Line	embryonic stem cell
40	chr7:105573600-105575600	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr7:105573800-105574600	Weak transcription	Right Atrium	heart
42	chr7:105573800-105575000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr7:105573800-105575200	Weak transcription	Brain Anterior Caudate	brain
44	chr7:105573800-105575200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr7:105573800-105575800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr7:105573800-105579200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr7:105573800-105580600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr7:105574000-105574600	Weak transcription	Brain Hippocampus Middle	brain
49	chr7:105574000-105575000	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr7:105574000-105575200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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